Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30846
         (508 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X01748-1|CAA25884.1|  148|Drosophila melanogaster protein ( Dros...    40   0.003
V00246-1|CAA23501.1|  148|Drosophila melanogaster protein ( Tran...    40   0.003
X77926-1|CAA54898.1|  218|Drosophila melanogaster BBC1 protein p...    36   0.024
AE014134-1746|ABC65888.1|  218|Drosophila melanogaster CG4651-PB...    36   0.024
AE014134-1745|AAF52842.1|  218|Drosophila melanogaster CG4651-PA...    36   0.024
BT010251-1|AAQ23569.1|  512|Drosophila melanogaster RE38958p pro...    33   0.29 
AE013599-2472|AAF57860.2|  512|Drosophila melanogaster CG14478-P...    33   0.29 
AE013599-2471|AAF57859.1|  512|Drosophila melanogaster CG14478-P...    33   0.29 

>X01748-1|CAA25884.1|  148|Drosophila melanogaster protein (
           Drosophila melanogastertransposon HB1. ).
          Length = 148

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = -3

Query: 218 KEKPLLNAVQKKKRLKFARDHLNWTSDQCRRIIWSDGSKI 99
           ++ PL +    K RL  A+ +LNW   + R I+W+DGSKI
Sbjct: 97  RKVPLPSPRHIKARLSLAKTYLNWPVSKWRNILWTDGSKI 136


>V00246-1|CAA23501.1|  148|Drosophila melanogaster protein (
           Transposable elementFB4 (foldback element) from
           Drosophila  (complete sequence).  ).
          Length = 148

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = -3

Query: 218 KEKPLLNAVQKKKRLKFARDHLNWTSDQCRRIIWSDGSKI 99
           ++ PL +    K RL  A+ +LNW   + R I+W+DGSKI
Sbjct: 97  RKVPLPSPRHIKARLSLAKTYLNWPVSKWRNILWTDGSKI 136


>X77926-1|CAA54898.1|  218|Drosophila melanogaster BBC1 protein
           protein.
          Length = 218

 Score = 36.3 bits (80), Expect = 0.024
 Identities = 16/26 (61%), Positives = 23/26 (88%)
 Frame = +1

Query: 343 IKQARSIAKLVGIRAKRLKDAAENPD 420
           +++AR+ A+LVGIRAKR K+AAE+ D
Sbjct: 182 LRKARTDARLVGIRAKRAKEAAESED 207


>AE014134-1746|ABC65888.1|  218|Drosophila melanogaster CG4651-PB,
           isoform B protein.
          Length = 218

 Score = 36.3 bits (80), Expect = 0.024
 Identities = 16/26 (61%), Positives = 23/26 (88%)
 Frame = +1

Query: 343 IKQARSIAKLVGIRAKRLKDAAENPD 420
           +++AR+ A+LVGIRAKR K+AAE+ D
Sbjct: 182 LRKARTDARLVGIRAKRAKEAAESED 207


>AE014134-1745|AAF52842.1|  218|Drosophila melanogaster CG4651-PA,
           isoform A protein.
          Length = 218

 Score = 36.3 bits (80), Expect = 0.024
 Identities = 16/26 (61%), Positives = 23/26 (88%)
 Frame = +1

Query: 343 IKQARSIAKLVGIRAKRLKDAAENPD 420
           +++AR+ A+LVGIRAKR K+AAE+ D
Sbjct: 182 LRKARTDARLVGIRAKRAKEAAESED 207


>BT010251-1|AAQ23569.1|  512|Drosophila melanogaster RE38958p
           protein.
          Length = 512

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = -3

Query: 218 KEKPLLNAVQKKKRLKFARDHLNWTSDQCRRIIWSD 111
           K +P+L+   + +RL FA  ++ W+ +  RR+++ D
Sbjct: 292 KTEPILSQYNQTERLNFANTYIVWSEEHWRRVVFHD 327


>AE013599-2472|AAF57860.2|  512|Drosophila melanogaster CG14478-PB,
           isoform B protein.
          Length = 512

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = -3

Query: 218 KEKPLLNAVQKKKRLKFARDHLNWTSDQCRRIIWSD 111
           K +P+L+   + +RL FA  ++ W+ +  RR+++ D
Sbjct: 292 KTEPILSQYNQTERLNFANTYIVWSEEHWRRVVFHD 327


>AE013599-2471|AAF57859.1|  512|Drosophila melanogaster CG14478-PA,
           isoform A protein.
          Length = 512

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = -3

Query: 218 KEKPLLNAVQKKKRLKFARDHLNWTSDQCRRIIWSD 111
           K +P+L+   + +RL FA  ++ W+ +  RR+++ D
Sbjct: 292 KTEPILSQYNQTERLNFANTYIVWSEEHWRRVVFHD 327


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,244,484
Number of Sequences: 53049
Number of extensions: 326727
Number of successful extensions: 690
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1825511424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)