Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30846
(508 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X01005-1|CAA25498.1| 273|Caenorhabditis elegans protein ( Caeno... 33 0.090
U39743-1|AAA80436.2| 314|Caenorhabditis elegans Hypothetical pr... 33 0.090
U29097-9|AAA68416.2| 343|Caenorhabditis elegans Hypothetical pr... 33 0.090
AF125450-4|AAD12818.1| 343|Caenorhabditis elegans Hypothetical ... 33 0.090
AF067947-2|AAC19229.2| 273|Caenorhabditis elegans Hypothetical ... 33 0.090
AF067947-1|AAC19233.1| 273|Caenorhabditis elegans Hypothetical ... 33 0.090
AF016682-7|AAB66191.2| 343|Caenorhabditis elegans Hypothetical ... 33 0.090
U23174-5|AAC46711.1| 329|Caenorhabditis elegans Hypothetical pr... 28 4.5
AF106576-3|AAK68401.1| 329|Caenorhabditis elegans Hypothetical ... 28 4.5
AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormo... 28 4.5
>X01005-1|CAA25498.1| 273|Caenorhabditis elegans protein (
Caenorhabditis eleganstransposable element Tc1. ).
Length = 273
Score = 33.5 bits (73), Expect = 0.090
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -3
Query: 215 EKPLLNAVQKKKRLKFARDHLNWTSDQCRRIIWSDGSK 102
+KP ++ + R+ +A+ HL W + + IWSD SK
Sbjct: 53 KKPFISKKNRMARVAWAKAHLRWGRQEWAKHIWSDESK 90
>U39743-1|AAA80436.2| 314|Caenorhabditis elegans Hypothetical
protein R173.2 protein.
Length = 314
Score = 33.5 bits (73), Expect = 0.090
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -3
Query: 215 EKPLLNAVQKKKRLKFARDHLNWTSDQCRRIIWSDGSK 102
+KP ++ + R+ +A+ HL W + + IWSD SK
Sbjct: 94 KKPFISKKNRMARVAWAKAHLRWGRQEWAKHIWSDESK 131
>U29097-9|AAA68416.2| 343|Caenorhabditis elegans Hypothetical
protein F18C5.7 protein.
Length = 343
Score = 33.5 bits (73), Expect = 0.090
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -3
Query: 215 EKPLLNAVQKKKRLKFARDHLNWTSDQCRRIIWSDGSK 102
+KP ++ + R+ +A+ HL W + + IWSD SK
Sbjct: 123 KKPFISKKNRMARVAWAKAHLRWGRQEWAKHIWSDESK 160
>AF125450-4|AAD12818.1| 343|Caenorhabditis elegans Hypothetical
protein Y39F10A.4 protein.
Length = 343
Score = 33.5 bits (73), Expect = 0.090
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -3
Query: 215 EKPLLNAVQKKKRLKFARDHLNWTSDQCRRIIWSDGSK 102
+KP ++ + R+ +A+ HL W + + IWSD SK
Sbjct: 123 KKPFISKKNRMARVAWAKAHLRWGRQEWAKHIWSDESK 160
>AF067947-2|AAC19229.2| 273|Caenorhabditis elegans Hypothetical
protein T10B5.9 protein.
Length = 273
Score = 33.5 bits (73), Expect = 0.090
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -3
Query: 215 EKPLLNAVQKKKRLKFARDHLNWTSDQCRRIIWSDGSK 102
+KP ++ + R+ +A+ HL W + + IWSD SK
Sbjct: 53 KKPFISKKNRMARVAWAKAHLRWGRQEWAKHIWSDESK 90
>AF067947-1|AAC19233.1| 273|Caenorhabditis elegans Hypothetical
protein T10B5.1 protein.
Length = 273
Score = 33.5 bits (73), Expect = 0.090
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -3
Query: 215 EKPLLNAVQKKKRLKFARDHLNWTSDQCRRIIWSDGSK 102
+KP ++ + R+ +A+ HL W + + IWSD SK
Sbjct: 53 KKPFISKKNRMARVAWAKAHLRWGRQEWAKHIWSDESK 90
>AF016682-7|AAB66191.2| 343|Caenorhabditis elegans Hypothetical
protein T07D3.8 protein.
Length = 343
Score = 33.5 bits (73), Expect = 0.090
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -3
Query: 215 EKPLLNAVQKKKRLKFARDHLNWTSDQCRRIIWSDGSK 102
+KP ++ + R+ +A+ HL W + + IWSD SK
Sbjct: 123 KKPFISKKNRMARVAWAKAHLRWGRQEWAKHIWSDESK 160
>U23174-5|AAC46711.1| 329|Caenorhabditis elegans Hypothetical
protein R10H1.3 protein.
Length = 329
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/38 (39%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Frame = -3
Query: 209 PLLNAVQKKKRLKFARDHL--NWTSDQCRRIIWSDGSK 102
PLL+A K KRL+FA++++ NW+ ++++SD K
Sbjct: 115 PLLSADHKLKRLEFAKNNMGTNWS-----KVVFSDEKK 147
>AF106576-3|AAK68401.1| 329|Caenorhabditis elegans Hypothetical
protein W07E6.6 protein.
Length = 329
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/38 (39%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Frame = -3
Query: 209 PLLNAVQKKKRLKFARDHL--NWTSDQCRRIIWSDGSK 102
PLL+A K KRL+FA++++ NW+ ++++SD K
Sbjct: 115 PLLSADHKLKRLEFAKNNMGTNWS-----KVVFSDEKK 147
>AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 88, isoform b protein.
Length = 459
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/38 (39%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Frame = -3
Query: 209 PLLNAVQKKKRLKFARDHL--NWTSDQCRRIIWSDGSK 102
PLL+A K KRL+FA++++ NW+ ++++SD K
Sbjct: 245 PLLSADHKLKRLEFAKNNMGTNWS-----KVVFSDEKK 277
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,620,985
Number of Sequences: 27780
Number of extensions: 176750
Number of successful extensions: 353
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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