Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30845
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.05 |alp11|SPAC4G9.01|tubulin specific chaperone cofacto...    57   2e-09
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    52   6e-08
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo...    36   0.004
SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase |Schizosacchar...    27   2.6  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    27   2.6  
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    26   4.5  
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.0  
SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces pom...    25   6.0  
SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|...    25   6.0  

>SPAC13D6.05 |alp11|SPAC4G9.01|tubulin specific chaperone cofactor
           B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 56.8 bits (131), Expect = 2e-09
 Identities = 24/44 (54%), Positives = 32/44 (72%), Gaps = 2/44 (4%)
 Frame = +3

Query: 117 GARRGVVRYNGTLAGAKG--LWIGVQYDEPLGKNDGSVNGKRYF 242
           G R G +RY G +       LW+GV++DEP+GKNDG+V+GKRYF
Sbjct: 162 GERYGTIRYIGLVPEINNDNLWVGVEFDEPVGKNDGTVSGKRYF 205


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 52.0 bits (119), Expect = 6e-08
 Identities = 21/40 (52%), Positives = 28/40 (70%)
 Frame = +3

Query: 129 GVVRYNGTLAGAKGLWIGVQYDEPLGKNDGSVNGKRYFTC 248
           G+VR+ G+     G+W+GV+     GKNDGSV GKRYF+C
Sbjct: 17  GIVRFAGSTDFESGIWLGVELLNGKGKNDGSVKGKRYFSC 56


>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
           Tip1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 35.9 bits (79), Expect = 0.004
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +3

Query: 126 RGVVRYNGTLAGAKGLWIGVQY---DEPLGKNDGSVNGKRYFTCPPN 257
           RG VRY G +   KG+++G++        GKN G V+G+ YF    N
Sbjct: 15  RGFVRYAGEVENRKGVYVGLELLPEFAEFGKNRGVVDGREYFKTKNN 61


>SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -2

Query: 223 TDPSFLPSGSSYCTPIQSPLAPASVPLYRTTPRR-APCCGTRTSQRALILS*IQEY 59
           TD   L + SS  +P  S       PL+  +PR  A C  T T Q  L+ +  + Y
Sbjct: 31  TDLQTLKNPSSLTSPSSSTSVDKKKPLFTKSPRNSASCESTITLQSNLLFTYYKHY 86


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1077

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 461  NTILEHIKMVHKNRNLILK 405
            N IL HIKM  K +++IL+
Sbjct: 996  NVILSHIKMAEKGKSIILR 1014


>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 714

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -2

Query: 235 RLPFTDPSFLPSGSSYCTPIQSPLAPASVPLYRTT 131
           R P T+ +F P G+ +  P      P +VP +  T
Sbjct: 69  RFPGTNANFFPFGAPFMLPPALMFGPNTVPFFPQT 103


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -2

Query: 277 WTNKSSILGGHVK*RLPFTDPSFLPSGSSYCTPIQSPLAPASVPLYRTTPRR 122
           W +K    G + K +     PS+  +GSS  +P +S  +P  V   + TP R
Sbjct: 442 WRSKYLSEGKNSKAKYTAKQPSYDRAGSSLASPTKSSASPL-VKAPKETPER 492


>SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -2

Query: 229 PFTDPSFLPSGSSYCTPIQSPLAPASVPLYRTTPRRAPCCGTRTS 95
           P TD   LPS S Y T  Q+ + P +  +     R +   G  TS
Sbjct: 269 PLTDIDGLPSQSHYQTQFQASVVPRTDVINEPPRRYSHANGVTTS 313


>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 176 PKSLGAGERAVVPDHTSPRPLLRH 105
           P+SL A + A++PD  + R + RH
Sbjct: 499 PRSLFAADEALLPDLNNAREISRH 522


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,984,035
Number of Sequences: 5004
Number of extensions: 36842
Number of successful extensions: 106
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)