Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30845
(575 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1698 - 35458500-35458547,35458919-35458988,35459626-354597... 69 4e-12
05_01_0038 + 260080-260380,260852-261022,261764-261810,262266-26... 44 7e-05
03_06_0003 + 30921197-30921388,30921514-30921632,30921742-309218... 30 1.1
05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818 28 4.6
02_01_0016 + 110796-110979,111252-111768,111847-112213 28 4.6
07_03_1556 + 27692770-27694119 28 6.1
02_05_0433 - 28939817-28940146 28 6.1
09_02_0239 + 6154758-6155039 27 8.1
05_03_0668 + 16793061-16793181,16793289-16793384,16794406-167945... 27 8.1
03_02_0097 + 5602912-5603293,5604599-5604676,5604935-5604963 27 8.1
>04_04_1698 -
35458500-35458547,35458919-35458988,35459626-35459759,
35460671-35460712,35460786-35460824
Length = 110
Score = 68.5 bits (160), Expect = 4e-12
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 1/59 (1%)
Frame = +3
Query: 78 KIRARCEVRVPQQGARRGVVRYNGTL-AGAKGLWIGVQYDEPLGKNDGSVNGKRYFTCP 251
K+ RCEV + GA+RG V++ G A +G W+GVQYDEPLGK+DG V G R+F CP
Sbjct: 27 KVGDRCEV---EPGAKRGTVKFVGRAEALGRGFWVGVQYDEPLGKHDGMVKGIRFFECP 82
>05_01_0038 +
260080-260380,260852-261022,261764-261810,262266-262412,
262495-262569,262826-262935,263032-263159,263368-263429,
263599-263748,263827-263861,264083-264151,264538-264629,
264718-264794,265434-265532
Length = 520
Score = 44.4 bits (100), Expect = 7e-05
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Frame = +3
Query: 120 ARRGVVRYNGTLAGAKGLWIGVQYDEPL-GKNDGSVNGKRYF 242
AR G VRY G + G G W+GV +D G++DGS+ G+RYF
Sbjct: 19 ARVGTVRYLGPVDGHPGDWLGVDWDAGAGGRHDGSLAGRRYF 60
>03_06_0003 +
30921197-30921388,30921514-30921632,30921742-30921811,
30922078-30922161,30922258-30922344,30922431-30922501,
30922648-30922702,30923374-30923509,30925009-30925103,
30925203-30925357,30925435-30925543,30925761-30925817,
30925913-30926027,30926177-30926264,30926738-30927501,
30927600-30927688,30928315-30928422,30928550-30928657,
30928887-30928977,30929235-30929287,30929557-30929712,
30930763-30930825,30931491-30931535,30932075-30932130,
30933051-30933132,30933238-30933354,30933428-30933530,
30933912-30934062,30934180-30934417,30934564-30934764,
30934850-30934935,30935036-30935135
Length = 1347
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 90 RCEVRVPQQGARRGVVRYNGTLAGAKGLWIGVQY 191
R E+ + QQ + VVRY G+ G + LWI ++Y
Sbjct: 770 RGEIEMLQQCSHPNVVRYFGSYQGEEYLWIVMEY 803
>05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818
Length = 743
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = -1
Query: 182 PDPKSLGAGERAVVPDHTSPRPLLRHADLA 93
P P +L AG RAV+ S PLLR D A
Sbjct: 38 PSPSALAAGRRAVLLVGVSVLPLLRLRDAA 67
>02_01_0016 + 110796-110979,111252-111768,111847-112213
Length = 355
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -2
Query: 217 PSFLPSGSSYCTPIQSPLAPASVPLYRTTPRRAP 116
PS +P+ P+ SP AP PL+R PRR P
Sbjct: 168 PSPIPTPIIAPPPVSSP-APPLPPLWRRRPRRLP 200
>07_03_1556 + 27692770-27694119
Length = 449
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -2
Query: 220 DPSFLP-SGSSYCTPIQSPLAPASVPLYRTTPRRAPCC 110
D +++P SG + C P SP PA+ YR P +P C
Sbjct: 129 DAAWIPCSGCAGC-PTSSPFNPAASASYRPVPCGSPQC 165
>02_05_0433 - 28939817-28940146
Length = 109
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 158 RRQGTLDRGAVRRAARQERWISEWQAL 238
RRQ L+R A RAA +++W QAL
Sbjct: 37 RRQEALERHAQERAAIEQQWRQSMQAL 63
>09_02_0239 + 6154758-6155039
Length = 93
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 231 CHSLIHRSCRAARRTAPRSKVPWRRRACRCTGP 133
CHS+ ++SC ++ R AP S +AC GP
Sbjct: 34 CHSICNQSCASSCRPAPISAC---GKACSLAGP 63
>05_03_0668 +
16793061-16793181,16793289-16793384,16794406-16794512,
16794726-16794774,16794858-16794967,16795329-16795423,
16795524-16795612,16795775-16795869,16795976-16796053,
16796425-16796481,16796776-16797027
Length = 382
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 96 EVRVPQQGARRGVVRYNGTLAGAK 167
+ R QG R GV+ Y GTLA K
Sbjct: 157 KTRFQTQGIRAGVIPYKGTLAALK 180
>03_02_0097 + 5602912-5603293,5604599-5604676,5604935-5604963
Length = 162
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 172 SPLAPASVPLYRTTPRRAPCCGTRTSQRA 86
SPL P P++R TP + C RT A
Sbjct: 55 SPLEPIPPPVHRRTPHHSDQCRRRTPSSA 83
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,222,368
Number of Sequences: 37544
Number of extensions: 267629
Number of successful extensions: 781
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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