Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30840
(751 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr... 26 5.0
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei... 26 5.0
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha... 26 6.6
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 26 6.6
SPAC11E3.12 |||conserved eukaryotic protein|Schizosaccharomyces ... 26 6.6
SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 26 6.6
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch... 25 8.7
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom... 25 8.7
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ... 25 8.7
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ... 25 8.7
>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 26.2 bits (55), Expect = 5.0
Identities = 18/66 (27%), Positives = 32/66 (48%)
Frame = +1
Query: 370 EMCPTDTAGYCRTSSTCARLLSMLRAV*HSDVVNQESETAERSTARTHAALKKLLEHPML 549
E P D G ++ + ++ S L+ + + Q +TA A+ AL+ L+E+P+
Sbjct: 185 EEFPDDYEGD-KSETAIFKIASDLKGIANKQFAQQNLDTA---VAKWQKALRYLMEYPVP 240
Query: 550 KDDGGE 567
DD E
Sbjct: 241 NDDSKE 246
>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -3
Query: 566 SPPS-SFSIGCSNNFFKAACVRAVD 495
+PPS SFS+ CS+ + +CV V+
Sbjct: 299 APPSYSFSLNCSHTYQPVSCVEPVN 323
>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 93
Score = 25.8 bits (54), Expect = 6.6
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 395 AIAEPLPLVRASSRCYAPCDTVTWL-TRKVRQLNDQLHAH 511
A+AEPL LVR S D + ++ R R+LN +LHA+
Sbjct: 6 AVAEPLDLVRLS------LDEIVYVKLRGDRELNGRLHAY 39
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 25.8 bits (54), Expect = 6.6
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = +1
Query: 367 QEMCPTDTAGYCRTSSTCARLLSMLRAV*--HSDVVNQESETAERSTARTHAALKKLLEH 540
Q +C RT + AR RAV HS + +E AER+ + ALK+ E
Sbjct: 273 QTVCAHGREINVRTKNAQARAQKANRAVLAYHSHIEKEEQRRAERNAKQRLQALKENDEE 332
Query: 541 PMLK 552
LK
Sbjct: 333 AYLK 336
>SPAC11E3.12 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 162
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 135 CSLNLCEQACEVQGESMWCS 194
C+ +C+QA E QG S W S
Sbjct: 88 CNSWMCQQAAEEQGNSNWDS 107
>SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 364
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 484 TAERSTARTHAALKKLLEHPMLKDDGGEGNYAYR 585
T E R AL++ EH ML D GG + +R
Sbjct: 133 TFEYHATRYQTALQEFREHEMLIDVGGNTHLTHR 166
>SPAP8A3.14c |||mitochondrial inner membrane protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 677
Score = 25.4 bits (53), Expect = 8.7
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -1
Query: 415 WKRFCNSQRYPWDT 374
WKR+C + Y W+T
Sbjct: 336 WKRWCRVKEYSWNT 349
>SPCPJ732.01 |vps5||retromer complex subunit
Vps5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 475 ESETAERSTARTHAALKKLLEHPMLKDD 558
+ E E+ A L+K+ HP+L+DD
Sbjct: 277 DDEFIEQRRAALEVMLRKISAHPVLRDD 304
>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 965
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 705 ESSRSSITFGSLHARRSLWSPRSXLASTIPAF 610
+SS S + S+ +R L+SPR L ++PAF
Sbjct: 385 QSSLLSFEWISIISRALLFSPRPSLLISVPAF 416
>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 25.4 bits (53), Expect = 8.7
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = +3
Query: 174 GESMWCSCYPGFRFNAESYSKQEQPYCLM*TSVRRTTVGVSNAASMILEASTANAHRRSH 353
G SM + FR+++ S + P + VG SNA + S + H++SH
Sbjct: 73 GSSMSRTSASSFRYSSPQKSSIDTPITSSDQGLTPDLVGSSNALNKPTRESDSLKHQKSH 132
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,215,557
Number of Sequences: 5004
Number of extensions: 67331
Number of successful extensions: 204
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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