Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30838
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    25   8.3  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   8.3  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    25   8.3  

>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 534 LLGACFKSLTAMLLDYCYQPRFDRREPL*ILMLIFKQLIY 653
           L+G     +TA+LL Y Y  R+   E   IL++ +    +
Sbjct: 242 LIGVSIGLITALLLKYSYLRRYPSIESCIILLMAYTSYFF 281


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -1

Query: 701 KHFIENSNDLTSNTTTINKLL 639
           KH I+NSND+ S+  TIN +L
Sbjct: 887 KH-IKNSNDILSSVFTINDML 906


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 704 VKHFIENSNDLTSNTTTIN 648
           + H   NSN ++SN+T++N
Sbjct: 574 INHHTSNSNSISSNSTSLN 592


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,720,103
Number of Sequences: 5004
Number of extensions: 52442
Number of successful extensions: 99
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)