Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30837
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein...   109   3e-25
SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein S18|Schizos...   109   3e-25
SPCC1795.07 |||mitochondrial ribosomal protein subunit S37 |Schi...    29   0.48 
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    27   2.6  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    26   4.5  
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    25   6.0  

>SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 152

 Score =  109 bits (262), Expect = 3e-25
 Identities = 49/67 (73%), Positives = 59/67 (88%)
 Frame = +2

Query: 74  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 253
           MSLV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KRAGE T
Sbjct: 1   MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELT 60

Query: 254 EKRLKKL 274
            + L+++
Sbjct: 61  TEELERI 67



 Score =  108 bits (260), Expect = 5e-25
 Identities = 49/70 (70%), Positives = 59/70 (84%)
 Frame = +1

Query: 256 EEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHR 435
           EE+E+I+TI+ NP Q+KIP WFLNRQKDI DGK  QL ++N+DSKLREDLERLKKI+ HR
Sbjct: 62  EELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTHR 121

Query: 436 GMRHYWGLRV 465
           G+RH   LRV
Sbjct: 122 GLRHALDLRV 131


>SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 152

 Score =  109 bits (262), Expect = 3e-25
 Identities = 49/67 (73%), Positives = 59/67 (88%)
 Frame = +2

Query: 74  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 253
           MSLV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KRAGE T
Sbjct: 1   MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELT 60

Query: 254 EKRLKKL 274
            + L+++
Sbjct: 61  TEELERI 67



 Score =  108 bits (260), Expect = 5e-25
 Identities = 49/70 (70%), Positives = 59/70 (84%)
 Frame = +1

Query: 256 EEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHR 435
           EE+E+I+TI+ NP Q+KIP WFLNRQKDI DGK  QL ++N+DSKLREDLERLKKI+ HR
Sbjct: 62  EELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTHR 121

Query: 436 GMRHYWGLRV 465
           G+RH   LRV
Sbjct: 122 GLRHALDLRV 131


>SPCC1795.07 |||mitochondrial ribosomal protein subunit S37
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 151

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +1

Query: 400 DLERLKKIRAHRGMRHYWGLRV 465
           D+ RL  IR +RGMRH  GL V
Sbjct: 76  DISRLVNIRCYRGMRHVNGLPV 97


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = +2

Query: 122 NTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEKRLKKLSLSCRILGS 301
           NTN    ++V    T   G  ++ S   LKK D+ +     +CT     ++  + + L S
Sbjct: 658 NTNAKASKRVYITFT---GYDKKPSIDNLKKLDMSITSNPSKCTHLIAPRILRTSKFLCS 714

Query: 302 IRY 310
           I Y
Sbjct: 715 IPY 717


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 403 NLHGVLNPSWRRSAGCIYHQQYPFAYLGTSLVSY 302
           N H  ++PS R S+  +Y    P  Y  ++ VSY
Sbjct: 495 NNHCAVSPSRRSSSNALYLATLPMGYERSNSVSY 528


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 137 GKRKVMFAMTAIKGVGRRYSNIVLKKADIDL 229
           GK+KV+     I  + R+YSN+  +KA+  L
Sbjct: 10  GKKKVIGNRQCILSLYRKYSNVQSRKAEDQL 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,278,253
Number of Sequences: 5004
Number of extensions: 48358
Number of successful extensions: 130
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)