Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30837
(573 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582 119 2e-27
07_01_0525 + 3904388-3904390,3904485-3904645,3905347-3905394,390... 119 2e-27
03_06_0283 - 32832572-32832677,32833343-32833531,32833582-328337... 119 2e-27
07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978 79 3e-15
03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372 31 0.65
03_01_0404 + 3138624-3140096 31 0.65
07_01_0163 + 1149466-1150593,1150733-1150937,1151453-1151485,115... 29 2.6
01_04_0017 - 15113479-15113580,15113950-15114117,15115011-151152... 29 3.5
06_03_1275 + 28903961-28904123,28904225-28904322,28904406-289045... 28 4.6
03_01_0646 + 4742398-4742994,4743681-4744085 27 8.0
01_07_0179 - 41814886-41815074,41815172-41815222,41815365-418154... 27 8.0
>07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582
Length = 148
Score = 119 bits (286), Expect = 2e-27
Identities = 48/70 (68%), Positives = 64/70 (91%)
Frame = +1
Query: 256 EEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHR 435
EE+E+++T+++NPRQ+K+PDWFLNR+KD DG++SQ+ S+ LD KLR+DLERLKKIR HR
Sbjct: 58 EELERLMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHR 117
Query: 436 GMRHYWGLRV 465
G+RHYWGLRV
Sbjct: 118 GLRHYWGLRV 127
Score = 96.3 bits (229), Expect = 2e-20
Identities = 40/61 (65%), Positives = 55/61 (90%)
Frame = +2
Query: 92 DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEKRLKK 271
+ FQHILR++NTN+DGK+K+MFA+T+IKG+GRR+SNI KKADID++KRAGE T + L++
Sbjct: 3 EDFQHILRLLNTNVDGKQKIMFALTSIKGIGRRFSNIACKKADIDMNKRAGELTPEELER 62
Query: 272 L 274
L
Sbjct: 63 L 63
>07_01_0525 +
3904388-3904390,3904485-3904645,3905347-3905394,
3905714-3905902,3906872-3906977
Length = 168
Score = 119 bits (286), Expect = 2e-27
Identities = 48/70 (68%), Positives = 64/70 (91%)
Frame = +1
Query: 256 EEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHR 435
EE+E+++T+++NPRQ+K+PDWFLNR+KD DG++SQ+ S+ LD KLR+DLERLKKIR HR
Sbjct: 78 EELERLMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHR 137
Query: 436 GMRHYWGLRV 465
G+RHYWGLRV
Sbjct: 138 GLRHYWGLRV 147
Score = 92.7 bits (220), Expect = 2e-19
Identities = 39/57 (68%), Positives = 52/57 (91%)
Frame = +2
Query: 74 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAG 244
MSL+ + FQHILR++NTN+DGK+K+MFA+T+IKGVGRR+SNI KKADID++KR+G
Sbjct: 1 MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRSG 57
>03_06_0283 -
32832572-32832677,32833343-32833531,32833582-32833796,
32833900-32833902
Length = 170
Score = 119 bits (286), Expect = 2e-27
Identities = 48/70 (68%), Positives = 64/70 (91%)
Frame = +1
Query: 256 EEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHR 435
EE+E+++T+++NPRQ+K+PDWFLNR+KD DG++SQ+ S+ LD KLR+DLERLKKIR HR
Sbjct: 80 EELERLMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHR 139
Query: 436 GMRHYWGLRV 465
G+RHYWGLRV
Sbjct: 140 GLRHYWGLRV 149
Score = 93.5 bits (222), Expect = 1e-19
Identities = 47/115 (40%), Positives = 72/115 (62%)
Frame = +2
Query: 74 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 253
MSL+ + FQHILR++NTN+DGK+K+MFA+T+IKGVGRR+SNI KKADID++KR
Sbjct: 1 MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRQEPPP 60
Query: 254 EKRLKKLSLSCRILGSIRYQTGS*IGKRILLMVNTAS*PPPTWIQNSVKIWRGSR 418
+++S+ ++G T + + + ++ N P W N K ++ R
Sbjct: 61 PPSRRQISV---MVGGAGELTPEELERLMTVVANPRQFKVPDWFLNRKKDYKDGR 112
>07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978
Length = 78
Score = 78.6 bits (185), Expect = 3e-15
Identities = 35/51 (68%), Positives = 42/51 (82%), Gaps = 1/51 (1%)
Frame = +1
Query: 316 WFL-NRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRV 465
W L R+KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRV
Sbjct: 7 WILPERKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRV 57
>03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372
Length = 161
Score = 31.1 bits (67), Expect = 0.65
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +1
Query: 394 REDLERLKKIRAHRGMRHYWGLRV 465
R +ERLK+IR +RG+RH GL V
Sbjct: 108 RVAIERLKEIRCYRGIRHKLGLPV 131
>03_01_0404 + 3138624-3140096
Length = 490
Score = 31.1 bits (67), Expect = 0.65
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +1
Query: 346 DGKYSQLTSSNLDSKLREDLERLKKIRAHRGMR 444
+G Y QL++ LDS ++D R++K+ RG+R
Sbjct: 403 EGVYVQLSNIYLDSNRKDDARRVRKLIGSRGIR 435
>07_01_0163 +
1149466-1150593,1150733-1150937,1151453-1151485,
1152244-1153646
Length = 922
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = -1
Query: 288 RHDSDNFFNLFSVHSPARLSRSMSAFLR 205
RH+ +F +L++VH+P RL S+ ++R
Sbjct: 411 RHEVADFLSLWAVHAPVRLQGSLLDWIR 438
>01_04_0017 -
15113479-15113580,15113950-15114117,15115011-15115229,
15115303-15115446,15115558-15115840,15115936-15115991,
15116067-15116216,15116299-15116385,15116463-15116498,
15116746-15116808,15116887-15116967,15117053-15117142,
15117349-15117426,15117510-15117731,15117788-15117835,
15117948-15118133,15120910-15121009,15121107-15121246
Length = 750
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +1
Query: 163 DGYQRCWPEVLQHCSQKSRH*S*QACWRMHREEVEKIITIMSNPRQYKIPDWFLNRQ 333
+ Y + + C+QK H Q + +RE E+ IT M P + D F+ R+
Sbjct: 40 EDYMMLYTTIYNMCTQKPPHDYSQQLYEKYRESFEEYITSMVLPSLREKHDEFMLRE 96
>06_03_1275 +
28903961-28904123,28904225-28904322,28904406-28904550,
28904690-28904814,28904957-28905049,28905297-28905362,
28905459-28905524,28905790-28905870,28905947-28906123,
28906212-28906287,28906394-28906521,28906639-28906950
Length = 509
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -1
Query: 219 SAFLRTMLEYLRPTPLIAVIANITL 145
S+FL TM EY+R P A +AN T+
Sbjct: 255 SSFLGTMEEYIREAPRTAPVANKTV 279
>03_01_0646 + 4742398-4742994,4743681-4744085
Length = 333
Score = 27.5 bits (58), Expect = 8.0
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 157 CDDGYQRCWPEVLQHCSQKSR 219
CDD Y+R W +L+ ++SR
Sbjct: 296 CDDSYRRAWSRLLRRLVRESR 316
>01_07_0179 -
41814886-41815074,41815172-41815222,41815365-41815469,
41815852-41815945,41816056-41816150,41816581-41816700,
41816737-41816832,41817272-41817569,41817777-41817853,
41818932-41819447
Length = 546
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 404 WRGSRRFALTEGCDITGAFVCVVSTLRLLAGEEEL 508
W+ FA+ G D+ F+ + T LLA EE L
Sbjct: 212 WQEESCFAIGAGTDVANLFISIKRTQLLLATEEWL 246
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,725,666
Number of Sequences: 37544
Number of extensions: 307980
Number of successful extensions: 832
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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