Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30836
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       28   1.3  
SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual          28   1.7  
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54...    27   2.9  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    27   2.9  
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch...    27   3.8  
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c...    27   3.8  
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   5.0  
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    26   5.0  

>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 247 TETCPRRFVWSTDRLQRTNDSHFHT 173
           TE CP+ FVW  +++ +    + HT
Sbjct: 506 TEDCPKEFVWGVEKVFQERRLNIHT 530


>SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 229 RFVWSTDRLQRTNDSHFHTPSPSKARILNQPVALS 125
           +F W+ D   + ND  F   S +K  + N P  LS
Sbjct: 256 KFFWNCDTEDKVNDFRFLFSSKNKYTLQNDPTTLS 290


>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
           Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -3

Query: 702 IILDSTQEQSFWQRSSPLTPTTQSGDGPNIEARER*CLFLSTVKAAEVLELTLG 541
           +  DS +  S  ++  PLT    + D PN + +++     S  KA+E ++  LG
Sbjct: 715 LAFDSDEIDSLTKKKDPLTKIDHTIDSPNTKEKDK--EISSWKKASEYMDTNLG 766


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = -2

Query: 310 DQSPSNTILYLASSQAQQSGWTETCPRRFVWSTDRLQRTNDSHFHTPSPSKARILN 143
           ++SPS+ I +L      +     TC   F  ST+RL +     F T   S + ILN
Sbjct: 560 NESPSDGIAFLTQHSIIKQSDNPTCIVEFFHSTNRLSKRVLGEFLTKG-SNSHILN 614


>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 538

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +1

Query: 637 GGGSEWTGPLPERL 678
           GGG EWTG L ER+
Sbjct: 441 GGGKEWTGFLKERM 454


>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 304 SPSNTILYLASSQAQQSGWTETCPRRFVWSTDRLQRTNDS 185
           +P N  L+ +S+ A Q G   T P  F +S     +T+ S
Sbjct: 131 TPKNPSLFSSSNAASQRGSLNTAPSNFAYSHSSSLQTSAS 170


>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 536

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +2

Query: 605 LASMFGPSPDWVVGVSGLDLCQKDCSWVESKIIDLYPYDAGNRQ 736
           L S   P+  W+  +  L+L  K CSW+ES  + L  Y   ++Q
Sbjct: 295 LNSQLQPAEIWLPQL--LELPSKHCSWLESAPLRLQAYANFSKQ 336


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 357 THFSDVIGATHPKNFTFWGEGQLASDGFRS 446
           T+F+ ++ A++  N TFW  G  +++G  S
Sbjct: 219 TNFTCIVNASNATNSTFWLNGTNSTNGTNS 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,238,213
Number of Sequences: 5004
Number of extensions: 68720
Number of successful extensions: 209
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)