Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30832
(582 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 2.0
SPAC1556.08c ||SPAC1F12.01c|protein kinase activator Snf4 |Schiz... 27 2.0
SPAC23C11.17 |||mitochondrial inner membrane protein involved in... 27 2.0
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 26 3.5
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac... 26 3.5
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy... 26 4.6
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 26 4.6
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 4.6
SPAC17H9.16 |tom22||mitochondrial TOM complex subunit Tom22|Schi... 25 6.1
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 25 6.1
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 25 6.1
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 25 8.1
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 25 8.1
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc... 25 8.1
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm... 25 8.1
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 27.1 bits (57), Expect = 2.0
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Frame = +2
Query: 140 EEKDENLNPEDVAESGD---DKSTVSKEQDDSE 229
E ++E N +DV +SGD DK++++ E D+E
Sbjct: 241 ESEEEGSNVDDVEDSGDSSSDKNSINHEIRDNE 273
>SPAC1556.08c ||SPAC1F12.01c|protein kinase activator Snf4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 334
Score = 27.1 bits (57), Expect = 2.0
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 2 VHRLXXXXXXXXXIGIISLSDLLMYLVLRPTGECGV 109
VHRL GI+SL+D+L Y++ T GV
Sbjct: 288 VHRLFVVDENLKLEGILSLADILNYIIYDKTTTPGV 323
>SPAC23C11.17 |||mitochondrial inner membrane protein involved in
potassium ion transport|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 27.1 bits (57), Expect = 2.0
Identities = 10/27 (37%), Positives = 20/27 (74%)
Frame = +3
Query: 177 QNPEMINQQFQKNKTIAKNALSAKSKQ 257
++P++ +Q ++NK +K A+SAKS +
Sbjct: 450 EHPDLAKKQTEENKATSKPAVSAKSPE 476
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 26.2 bits (55), Expect = 3.5
Identities = 12/45 (26%), Positives = 28/45 (62%)
Frame = +2
Query: 137 IEEKDENLNPEDVAESGDDKSTVSKEQDDSEERTQCQE*TNAIPR 271
++++D++ + E ES +++S S E + SEE ++ +E +P+
Sbjct: 30 LKKQDDSSSEE---ESSEEESASSSESESSEEESESEESEVEVPK 71
>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
Alg6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 506
Score = 26.2 bits (55), Expect = 3.5
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Frame = -3
Query: 355 INHRGHFEYQCKQNGVVMEIAKPLTK---LKTRNRICLLLA---LSAFFAIVLFF 209
I+H GHF+Y C G+VM L K + CL L ++ +FA +FF
Sbjct: 179 IDH-GHFQYNCVMLGLVMYAIANLLKNQYVAATFFFCLALTFKQMALYFAPPIFF 232
>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 396
Score = 25.8 bits (54), Expect = 4.6
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 65 LLMYLVLRPTGECGVTSLRNEHAPIEEKD 151
L+MY + P E S+ N + PIE D
Sbjct: 173 LIMYFFVLPESESTSPSINNNYTPIESID 201
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 25.8 bits (54), Expect = 4.6
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 110 TSLRNEHAPIEEKDENLNPEDVAESGDDKSTVSKEQDDSE 229
T+L N + E +N E+ SGD ++ K+ DDS+
Sbjct: 129 TNLDNSNMDESENQKNFKIEEPKPSGDFRNEGPKQCDDSK 168
>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 956
Score = 25.8 bits (54), Expect = 4.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 235 HSVPRVNKCDSASSI*LTASRSPSRRHFVCID 330
HS+ + KC S ++ S S+ FVC+D
Sbjct: 849 HSLEFILKCSKVKSYDISPSSINSKEAFVCLD 880
>SPAC17H9.16 |tom22||mitochondrial TOM complex subunit
Tom22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 144
Score = 25.4 bits (53), Expect = 6.1
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 110 TSLRNEHAPIEEKDENL-NPEDVAESGDDKS 199
T ++NE + EKD+ + EDV ES D+S
Sbjct: 11 TEVQNEQQTVIEKDQYIYAQEDVEESDSDES 41
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 25.4 bits (53), Expect = 6.1
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 225 AKNALSAKSKQMRFRVFNLV 284
A+NALSA KQ+ RV N+V
Sbjct: 809 AENALSAAGKQLGNRVLNVV 828
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 25.4 bits (53), Expect = 6.1
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 137 IEEKDENL-NPEDVAESGDDKSTVSKEQDDSE 229
+E +DE + N +D+ E GD+ + V E DD +
Sbjct: 359 LESEDEEVDNSDDIVEDGDN-AFVDDEDDDKD 389
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 25.0 bits (52), Expect = 8.1
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +2
Query: 110 TSLRNEHAPIEEKDENLNPEDVAESGDDKSTVSKEQDDSE 229
T L + + E L ED AES +TVS D+E
Sbjct: 249 TVLEDNQLKSNSRIETLEEEDGAESDSITNTVSNASSDAE 288
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 25.0 bits (52), Expect = 8.1
Identities = 21/83 (25%), Positives = 35/83 (42%)
Frame = -1
Query: 555 TVFTLNVLHTMYYCIQY*FTTASTKISRRNTNHRYMYVDEKNIFYGLNAIRYLVHKIPKK 376
T T+N+ T YY I Y S K + T+ + KN+ ++ +P+K
Sbjct: 642 TPVTINIQSTTYYLIGY-ANQNSKKTLDQPTSLLVLGCKAKNVS------ELILSYLPEK 694
Query: 375 KITDCNPLITAAILNINANKMAS 307
I D P++T + N+ S
Sbjct: 695 PIPDGAPIVTNVVETNKTNEAPS 717
>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 25.0 bits (52), Expect = 8.1
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 231 NALSAKSKQMRFRVFNLVNGFAISITTPFCL 323
N L+AKS+ R F + F + I PF L
Sbjct: 545 NTLTAKSEAKTIRSFTKLKLFILLIAVPFAL 575
>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1292
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 190 ISGFCYVFGIQVLVLFFYGRVF 125
I+ F V GIQV+++FF G F
Sbjct: 1088 IAIFVIVAGIQVIIVFFGGAAF 1109
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,266,021
Number of Sequences: 5004
Number of extensions: 45416
Number of successful extensions: 154
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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