Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30831
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    28   1.1  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    27   2.0  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.5  
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         27   3.5  
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei...    26   4.6  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    26   6.1  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    25   8.0  

>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 531 YKVDDVIGEKDSQSYNYIKKFVE 599
           Y VD V+ + ++Q+Y ++KKF E
Sbjct: 67  YPVDGVVPKHETQAYEFLKKFPE 89


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 129 TILPIVKQSETTADMFTG**TFLFQLNNVWLYF 31
           TI P  K  +  A   T   +F+F L ++WLYF
Sbjct: 475 TITPATKSDKGWAGFLTFAFSFVFLLFSIWLYF 507


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1038

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = -3

Query: 458  SITLAIAMNSLCPSGSRHADNADTNLRLFSIEFLTLVFNLCKFNDCGGSGTVDTSF 291
            SI    + +++    S+ ADN++TNL  F+     +   L  F+  G  G+ D  +
Sbjct: 856  SINSGASADAVSSGISKKADNSETNLNYFATLDAFVKSPLMSFDGLGELGSTDQRY 911


>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +1

Query: 184 SSNKNVDSEMPIVQRQSETARR 249
           S++K  D+E+P+V+ + E AR+
Sbjct: 518 SASKTTDTEIPLVKNEDENARK 539


>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
           Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 182 DPQTKMLILKCQSSSGNPKRHDVNT*TCPSS 274
           +P+T   +   +S+ G+   ++ NT T PSS
Sbjct: 145 EPETSTSVENAESAKGSSDENEANTATAPSS 175


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +1

Query: 184 SSNKNVDSEMPIVQRQS--ETARRQYVNLSLVSDVQIKKEVSTVPEPPQS 327
           + N+ V++  P+ Q +S  E  + +  N+S     Q + EVS   E P+S
Sbjct: 218 NGNEEVNNLEPVGQNESKQEPPKEENSNVSQEQPEQAQPEVSAASEQPES 267


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -3

Query: 506 ILLLYTRMLCPAQDTSSITLAIAMNSLCPSGSRHADNADTNL-RLFSIEFLTLVFNLCKF 330
           +LLL  RM    +  ++++L   ++S C  G+   D A   + + F  +   L+FN    
Sbjct: 618 LLLLEKRMESEGKAPTALSLVAFVSSYCKQGAEGLDEAKRYMSKNFQPDKRALLFNPRTA 677

Query: 329 ND 324
           ND
Sbjct: 678 ND 679


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,869,639
Number of Sequences: 5004
Number of extensions: 59923
Number of successful extensions: 176
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)