Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30831
         (709 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0483 - 25554531-25554605,25554681-25555644,25555722-255558...    35   0.055
02_05_0705 - 31074246-31074296,31074632-31074770,31075636-310757...    35   0.055
06_01_0309 - 2233573-2234556,2234670-2234721,2235406-2236391,223...    29   4.8  
10_08_0131 - 15078894-15079617,15079898-15080016                       28   8.4  

>04_04_0483 -
           25554531-25554605,25554681-25555644,25555722-25555847,
           25556162-25556331,25556431-25556526
          Length = 476

 Score = 35.1 bits (77), Expect = 0.055
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
 Frame = +1

Query: 172 PSFRSSNKNVDSEMPIVQRQSETARRQYVN--LSLVSDVQIKKEVSTVPEPPQSLNLHRL 345
           P+ +SS+ +V+ + P++QR +   R QYV   L+ V ++   KEV     P +  N   +
Sbjct: 268 PAPKSSSTSVEEQSPLIQRNNHRDRGQYVRPVLNPVQNMSQWKEVKAQAAPAKKSNKENV 327

Query: 346 NT 351
           N+
Sbjct: 328 NS 329


>02_05_0705 -
           31074246-31074296,31074632-31074770,31075636-31075716,
           31077228-31077401,31077501-31077649
          Length = 197

 Score = 35.1 bits (77), Expect = 0.055
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +2

Query: 110 FTIGSIVATRTCYNENIEGEVLAFDPQTKMLILKCQSSS 226
           F IG +++ +T   E  EG++++FD  T +L++   S S
Sbjct: 8   FAIGVLISVKTTLGEEFEGQIVSFDRPTNLLVIHILSKS 46


>06_01_0309 -
           2233573-2234556,2234670-2234721,2235406-2236391,
           2237790-2238050
          Length = 760

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +3

Query: 480 EHPSIQ*QNTQVMITPPYKVDDVIGEKDSQSYNYIKKFVER 602
           E+  +Q Q+T ++   P+K    + +  ++ YN + K +ER
Sbjct: 190 ENAGVQDQSTPLVAANPHKSPSTVSKSSTKCYNTVSKKLER 230


>10_08_0131 - 15078894-15079617,15079898-15080016
          Length = 280

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = +1

Query: 226 RQSETARRQYVN---LSLVSDVQIKKEVSTVPEPPQSLNLH 339
           R+ E  R +Y+N    ++ + V I KE  +V  PP +++LH
Sbjct: 49  RRDELERSEYLNDDYFAIAAHVIIPKEKPSVVVPPSNMHLH 89


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,743,401
Number of Sequences: 37544
Number of extensions: 395664
Number of successful extensions: 987
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)