Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30831
         (709 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC044587-1|AAH44587.1|  195|Homo sapiens LSM12 homolog (S. cerev...    64   6e-10
AK055218-1|BAB70877.1|  195|Homo sapiens protein ( Homo sapiens ...    64   6e-10
BC105288-1|AAI05289.1|  131|Homo sapiens LSM12 protein protein.        56   1e-07
BC016034-1|AAH16034.2|  856|Homo sapiens rhomboid 5 homolog 2 (D...    31   5.3  

>BC044587-1|AAH44587.1|  195|Homo sapiens LSM12 homolog (S.
           cerevisiae) protein.
          Length = 195

 Score = 63.7 bits (148), Expect = 6e-10
 Identities = 28/55 (50%), Positives = 39/55 (70%)
 Frame = +2

Query: 86  MSAVVSDCFTIGSIVATRTCYNENIEGEVLAFDPQTKMLILKCQSSSGNPKRHDV 250
           M+A   + F++GS V+ RTC  + ++GEV+AFD Q+KML LKC SSSG P   D+
Sbjct: 1   MAAPPGEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALKCPSSSGKPNHADI 55



 Score = 55.2 bits (127), Expect = 2e-07
 Identities = 29/79 (36%), Positives = 44/79 (55%)
 Frame = +1

Query: 256 VNLSLVSDVQIKKEVSTVPEPPQSLNLHRLNTRVRNSIENKRRLVSALSACLDPEGQRLF 435
           +NL  VS+V+I  + +  P P  SLN+ +L ++ R   E K     A+SA +  EGQ+LF
Sbjct: 58  INLQYVSEVEIINDRTETPRPLASLNVSKLASKARTEKEEKLSQAYAISAGVSLEGQQLF 117

Query: 436 MAIARVIDDVSWAGQSIRV 492
             I + I D  W  ++I V
Sbjct: 118 QTIHKTIKDCKWQEKNIVV 136



 Score = 34.7 bits (76), Expect = 0.33
 Identities = 13/33 (39%), Positives = 26/33 (78%)
 Frame = +3

Query: 510 QVMITPPYKVDDVIGEKDSQSYNYIKKFVERHW 608
           +V+ITPPY+V++  G K+  + ++++K VE+H+
Sbjct: 139 EVVITPPYQVENCKG-KEGSALSHVRKIVEKHF 170


>AK055218-1|BAB70877.1|  195|Homo sapiens protein ( Homo sapiens
           cDNA FLJ30656 fis, clone DFNES2000292. ).
          Length = 195

 Score = 63.7 bits (148), Expect = 6e-10
 Identities = 28/55 (50%), Positives = 39/55 (70%)
 Frame = +2

Query: 86  MSAVVSDCFTIGSIVATRTCYNENIEGEVLAFDPQTKMLILKCQSSSGNPKRHDV 250
           M+A   + F++GS V+ RTC  + ++GEV+AFD Q+KML LKC SSSG P   D+
Sbjct: 1   MAAPPGEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALKCPSSSGKPNHADI 55



 Score = 54.8 bits (126), Expect = 3e-07
 Identities = 29/79 (36%), Positives = 44/79 (55%)
 Frame = +1

Query: 256 VNLSLVSDVQIKKEVSTVPEPPQSLNLHRLNTRVRNSIENKRRLVSALSACLDPEGQRLF 435
           +NL  VS+V+I  + +  P P  SLN+ +L ++ R   E K     A+SA +  EGQ+LF
Sbjct: 58  INLQYVSEVEIINDRTETPPPLASLNVSKLASKARTEKEEKLSQAYAISAGVSLEGQQLF 117

Query: 436 MAIARVIDDVSWAGQSIRV 492
             I + I D  W  ++I V
Sbjct: 118 QTIHKTIKDCKWQEKNIVV 136



 Score = 34.7 bits (76), Expect = 0.33
 Identities = 13/33 (39%), Positives = 26/33 (78%)
 Frame = +3

Query: 510 QVMITPPYKVDDVIGEKDSQSYNYIKKFVERHW 608
           +V+ITPPY+V++  G K+  + ++++K VE+H+
Sbjct: 139 EVVITPPYQVENCKG-KEGSALSHVRKIVEKHF 170


>BC105288-1|AAI05289.1|  131|Homo sapiens LSM12 protein protein.
          Length = 131

 Score = 56.0 bits (129), Expect = 1e-07
 Identities = 27/58 (46%), Positives = 39/58 (67%), Gaps = 3/58 (5%)
 Frame = +2

Query: 86  MSAVVSDCFTIGSIVATRTCYNENIEGEVLAFDPQTKMLIL---KCQSSSGNPKRHDV 250
           M+A   + F++GS V+ RTC  + ++GEV+AFD Q+KML L   +C SSSG P   D+
Sbjct: 1   MAAPPGEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALISPECPSSSGKPNHADI 58



 Score = 49.6 bits (113), Expect = 1e-05
 Identities = 29/88 (32%), Positives = 44/88 (50%)
 Frame = +1

Query: 199 VDSEMPIVQRQSETARRQYVNLSLVSDVQIKKEVSTVPEPPQSLNLHRLNTRVRNSIENK 378
           +  E P    +   A    +NL  VS+V+I  + +  P P  SLN+ +L ++ R   E K
Sbjct: 42  ISPECPSSSGKPNHADILLINLQYVSEVEIINDRTETPPPLASLNVSKLASKARTEKEEK 101

Query: 379 RRLVSALSACLDPEGQRLFMAIARVIDD 462
                A+SA +  EGQ+LF  I + I D
Sbjct: 102 LSQAYAISAGVSLEGQQLFQTIHKTIKD 129


>BC016034-1|AAH16034.2|  856|Homo sapiens rhomboid 5 homolog 2
           (Drosophila) protein.
          Length = 856

 Score = 30.7 bits (66), Expect = 5.3
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
 Frame = +3

Query: 504 NTQVMITPPYKVDDVIGEKDSQ-----SYNYIKKFVERHWARSSHACAPTINP 647
           N  + I PP K     GE+DS          +KK   R WA  + AC P+  P
Sbjct: 26  NLSITIPPPEKETQAPGEQDSMLPEGFQNRRLKKSQPRTWASHTTACPPSFLP 78


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,034,798
Number of Sequences: 237096
Number of extensions: 2174746
Number of successful extensions: 4367
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4365
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8231208258
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)