Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30831
         (709 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          23   2.8  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   3.7  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   3.7  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               22   5.0  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    22   5.0  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    22   5.0  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   8.7  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   8.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   8.7  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   8.7  

>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +1

Query: 286 IKKEVSTVPEPPQSL 330
           ++  +S+VP+PP+SL
Sbjct: 49  VENTISSVPQPPRSL 63


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +3

Query: 525 PPYKVDDVIGEKDSQSYNYIKKFVERHWARSSHACAP 635
           P YK+D  + + +  +Y Y  + +  +W  SS    P
Sbjct: 217 PEYKLDYFMEDVELNAYYYYMREMLPYWMSSSQYHMP 253


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +3

Query: 525 PPYKVDDVIGEKDSQSYNYIKKFVERHWARSSHACAP 635
           P YK+D  + + +  +Y Y  + +  +W  SS    P
Sbjct: 217 PEYKLDYFMEDVELNAYYYYMREMLPYWMSSSQYHMP 253


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 12/50 (24%), Positives = 26/50 (52%)
 Frame = +1

Query: 262 LSLVSDVQIKKEVSTVPEPPQSLNLHRLNTRVRNSIENKRRLVSALSACL 411
           L +VS + ++ +  T+    ++LNL  +++ + +  E   R    + ACL
Sbjct: 11  LCIVSYMMVRCDDITLCLKQENLNLDDIDSLLEDESERMLRKRGCIEACL 60


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = -1

Query: 352 LCSICASSMIAGALVPWIPPS*FE 281
           L  +C  ++   A   W+PP  F+
Sbjct: 13  LALLCLHAIFVNAAPDWVPPEVFD 36


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = -1

Query: 352 LCSICASSMIAGALVPWIPPS*FE 281
           L  +C  ++   A   W+PP  F+
Sbjct: 13  LALLCLHAIFVNAAPDWVPPEVFD 36


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -1

Query: 517 ITWVFCYCILGCSVRPRTRR 458
           I W+    I GCS  P  +R
Sbjct: 8   IMWIVLVLISGCSGNPDAKR 27


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/16 (43%), Positives = 11/16 (68%), Gaps = 1/16 (6%)
 Frame = -1

Query: 535 LYGGVIITWVFCY-CI 491
           L G +++ W+ CY CI
Sbjct: 176 LAGTLLLVWILCYFCI 191


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/39 (23%), Positives = 22/39 (56%)
 Frame = +1

Query: 211 MPIVQRQSETARRQYVNLSLVSDVQIKKEVSTVPEPPQS 327
           + ++  ++ETA  +   + L S +Q   +  ++ EPP++
Sbjct: 279 LKLINAENETAHIKDSLIVLTSALQEMNKSKSITEPPKN 317


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/28 (25%), Positives = 13/28 (46%)
 Frame = +3

Query: 576 NYIKKFVERHWARSSHACAPTINPTLHR 659
           NY+ KFV  +W  +     P     +++
Sbjct: 338 NYLTKFVSEYWMETRGFLQPVCQNEMNK 365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,940
Number of Sequences: 438
Number of extensions: 4284
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)