Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30829
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    75   9e-15
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    33   0.046
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac...    29   0.75 
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    27   2.3  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    26   5.3  
SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   7.0  
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch...    26   7.0  

>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 75.4 bits (177), Expect = 9e-15
 Identities = 31/62 (50%), Positives = 49/62 (79%), Gaps = 2/62 (3%)
 Frame = +1

Query: 88  SMPKGTFNMDDFKRVYSNED-EAKSIPYFWEKFDPENYSIWYAEYKYPEELAK-VFMSVT 261
           S P G+F+++++KRVYSN+D  + ++P+F+E FDPENYS+W  +Y YPE+L + VFM+  
Sbjct: 257 SAPNGSFDIEEYKRVYSNQDTRSGALPWFFEHFDPENYSVWKVDYSYPEDLKQPVFMTNN 316

Query: 262 LL 267
           L+
Sbjct: 317 LI 318



 Score = 59.7 bits (138), Expect = 5e-10
 Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
 Frame = +3

Query: 258 NLITGMFQRLDKMRKQAFASVCLFGEDNNSTISGVWVWRGKELV--FPLSSDWQVDYESY 431
           NLI G FQRL+  RK  F    + GE+ ++TI+G +V +G + V  F ++ DW     SY
Sbjct: 316 NLIGGFFQRLEASRKYIFGCCVVIGENGDNTITGAFVIKGHDYVPAFDVAPDW----GSY 371

Query: 432 DWKKLDPSSEETKKLVQDYFSWN 500
            + KLD +  E K  ++D ++W+
Sbjct: 372 TFTKLDINKPEDKAFIEDAWAWD 394


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 33.1 bits (72), Expect = 0.046
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -2

Query: 351 WWNCCL-HQTGRRMRKPVCAFCLTSGTYP**GYTHEHLSEFLRVFVFGIPNGIVLG 187
           WWNC    Q  R   KPV  F L     P   +  + LS F   FV  + + +V+G
Sbjct: 359 WWNCWTWDQFARTWNKPVHYFLLRHVYVPLNSFMSKSLSTFFTFFVSSVLHELVMG 414


>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
           Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 177

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = -1

Query: 370 HTHTPEMVELLSS---PNRQTDAKACLRILSNLWNIPVIRLHS 251
           + H P  V+ L+    PN   +   CL IL   WN PV+ L+S
Sbjct: 80  YPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWN-PVLNLNS 121


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +3

Query: 411 QVDYESYDWKKLD 449
           QVDY SYDWK+ D
Sbjct: 298 QVDYLSYDWKETD 310


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 116 MISSVSTPTKTKLNLFLTSGRSLTPRTIPFGMPNTNTLRNSLRC 247
           +++  +TP  +  +L   SGRSL   T   G+ N +T   +  C
Sbjct: 843 LVTDTTTPYLSDFSLVNESGRSLLHLTAACGLSNASTFLCNAGC 886


>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 127

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 784 CKCYHFFSKRRVVFGTALMYT 722
           C C +F +  RV+FGT  +Y+
Sbjct: 57  CYCANFIALFRVIFGTIFVYS 77


>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 609

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 14/61 (22%), Positives = 27/61 (44%)
 Frame = +3

Query: 420 YESYDWKKLDPSSEETKKLVQDYFSWNGTEKTVESSTRARYSSECRQTSSQCIHISYNNY 599
           Y ++    +DP ++      + +  W   E  + ++T   Y+S         +H +YNNY
Sbjct: 62  YPTFTKPLIDPYTQTNAVSYERFIRWYSKENHISATTEDLYNS---------LHGTYNNY 112

Query: 600 K 602
           K
Sbjct: 113 K 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,122,441
Number of Sequences: 5004
Number of extensions: 67305
Number of successful extensions: 217
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)