Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30829
(784 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671... 53 2e-07
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899... 53 3e-07
06_03_0052 - 16027570-16027617,16027789-16027795,16028103-160283... 32 0.45
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 32 0.45
02_05_1052 + 33770355-33773981,33774217-33774336,33774880-337749... 31 1.4
08_02_0742 - 20630313-20630798 30 2.4
07_01_0481 - 3621798-3621926,3622572-3622660,3622780-3622933,362... 30 2.4
05_04_0146 + 18393447-18394043 29 3.2
01_06_1249 - 35714645-35716003,35716700-35716761,35717007-357171... 29 3.2
08_01_0656 + 5652383-5653009,5653260-5653736,5654969-5655289,565... 29 4.2
12_02_1103 + 26116614-26117607,26118060-26118242,26118344-26119518 29 5.5
02_05_0713 + 31159574-31160764 29 5.5
04_04_1445 - 33658355-33658417,33658536-33658669,33659056-336591... 28 7.3
03_02_0173 + 6138406-6138628,6139769-6139857,6139922-6140608,614... 28 7.3
07_03_1323 + 25813770-25814006,25814147-25814287,25814465-258145... 28 9.6
03_06_0260 - 32717142-32717270,32717743-32717831,32717950-327180... 28 9.6
>02_02_0095 +
6716327-6716335,6717302-6717451,6717523-6717583,
6717646-6717725,6717802-6717903,6717982-6718471,
6718796-6719171,6720320-6720379,6720887-6721056,
6721287-6721340,6721384-6721523,6722362-6722511,
6722582-6722642,6722705-6722784,6722933-6723034,
6723111-6723612,6724401-6724776,6725419-6725493,
6726058-6726198,6726264-6726282
Length = 1065
Score = 53.2 bits (122), Expect = 2e-07
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Frame = +1
Query: 85 DSMPKGTFNMDDFKRVYSNED---EAKSIPYFWEKFDPENYSIWYAEYKYPEELAKVFMS 255
D +P +D++KR+YSN +I FW+ +DPE YS+W+ +YKY +E F++
Sbjct: 268 DLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVT 327
Query: 256 V 258
+
Sbjct: 328 M 328
Score = 53.2 bits (122), Expect = 2e-07
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Frame = +1
Query: 85 DSMPKGTFNMDDFKRVYSNED---EAKSIPYFWEKFDPENYSIWYAEYKYPEELAKVFMS 255
D +P +D++KR+YSN +I FW+ +DPE YS+W+ +YKY +E F++
Sbjct: 833 DLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVT 892
Query: 256 V 258
+
Sbjct: 893 M 893
Score = 52.8 bits (121), Expect = 3e-07
Identities = 26/74 (35%), Positives = 39/74 (52%)
Frame = +3
Query: 258 NLITGMFQRLDKMRKQAFASVCLFGEDNNSTISGVWVWRGKELVFPLSSDWQVDYESYDW 437
N + G QR+D RK AF + + G + + G+W++RG E+ D D E Y+W
Sbjct: 329 NKVGGFLQRMDLCRKYAFGKMLVIGSEPPFKVKGLWLFRGPEIP-KFVMDEVYDMELYEW 387
Query: 438 KKLDPSSEETKKLV 479
K+D S E K+ V
Sbjct: 388 TKVDISDEAQKERV 401
Score = 52.8 bits (121), Expect = 3e-07
Identities = 26/74 (35%), Positives = 39/74 (52%)
Frame = +3
Query: 258 NLITGMFQRLDKMRKQAFASVCLFGEDNNSTISGVWVWRGKELVFPLSSDWQVDYESYDW 437
N + G QR+D RK AF + + G + + G+W++RG E+ D D E Y+W
Sbjct: 894 NKVGGFLQRMDLCRKYAFGKMLVIGSEPPFKVKGLWLFRGPEIP-KFVMDEVYDMELYEW 952
Query: 438 KKLDPSSEETKKLV 479
K+D S E K+ V
Sbjct: 953 TKVDISDEAQKERV 966
>06_03_0529 -
21788132-21788395,21788414-21788511,21789458-21789953,
21790033-21790134,21790218-21790270,21790354-21790414,
21790491-21790640,21791298-21791350,21794125-21794152
Length = 434
Score = 52.8 bits (121), Expect = 3e-07
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Frame = +1
Query: 85 DSMPKGTFNMDDFKRVYSNED---EAKSIPYFWEKFDPENYSIWYAEYKYPEELAKVFMS 255
D +P +D++KR+YSN +I FW+ +DPE YS+W+ +YKY +E F++
Sbjct: 285 DLLPPSKMILDEWKRLYSNTKTNFREIAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVT 344
Query: 256 V 258
+
Sbjct: 345 M 345
Score = 46.0 bits (104), Expect = 3e-05
Identities = 23/69 (33%), Positives = 37/69 (53%)
Frame = +3
Query: 273 MFQRLDKMRKQAFASVCLFGEDNNSTISGVWVWRGKELVFPLSSDWQVDYESYDWKKLDP 452
M +R+D RK AF + + G + G+W++RG+++ D D E Y+W K+D
Sbjct: 345 MNKRMDLCRKYAFGKMLVIGSTPPFKVKGLWLFRGQDIP-KFVMDEVYDMELYEWTKVDL 403
Query: 453 SSEETKKLV 479
S E K+ V
Sbjct: 404 SDEAQKERV 412
>06_03_0052 -
16027570-16027617,16027789-16027795,16028103-16028341,
16028432-16028566,16028670-16028888
Length = 215
Score = 32.3 bits (70), Expect = 0.45
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +1
Query: 304 RLSHPSACLVKTTIPPSPECGCGAERSSCSRCRLI 408
R HP++ LV+ T PP P G G S SR RL+
Sbjct: 30 RAGHPTSALVRATAPPPPATGGG---GSSSRARLL 61
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 32.3 bits (70), Expect = 0.45
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +1
Query: 310 SHPSACLVKTTIPPSPECGCGAERSSC 390
SH C+ K PP P CGC +C
Sbjct: 206 SHAFVCVCKPAPPPPPPCGCSGGHGNC 232
>02_05_1052 +
33770355-33773981,33774217-33774336,33774880-33774996,
33775322-33775411,33775971-33776078,33776304-33776351
Length = 1369
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +1
Query: 355 PECGCGAERSSCSRCRLIGRWTTSPTTGRNWILRARRPRNLSRTTSRGTEPKRR 516
P GA R R RL + G N+ ++ RP + S SRGT P+RR
Sbjct: 698 PSTSSGASRGISPRRRLASDGVDDLSKGINFSQKSIRP-STSSMASRGTSPRRR 750
>08_02_0742 - 20630313-20630798
Length = 161
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/66 (25%), Positives = 27/66 (40%)
Frame = +1
Query: 316 PSACLVKTTIPPSPECGCGAERSSCSRCRLIGRWTTSPTTGRNWILRARRPRNLSRTTSR 495
P ++++ PP P C CG S + + T P++ ARR R +
Sbjct: 25 PDPPSLRSSTPPDPSCHCGPSAGSTAAEVPHAGYATPPSSSHGEEEAARRRRRGRGEEAD 84
Query: 496 GTEPKR 513
G +P R
Sbjct: 85 GVDPVR 90
>07_01_0481 -
3621798-3621926,3622572-3622660,3622780-3622933,
3624104-3624111,3625522-3625547,3625757-3625881
Length = 176
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = -1
Query: 388 TSSFPRHTHTPEMVELLSSPNRQTDAKACLRILSNLWN 275
T +P T V + PN D CL IL N W+
Sbjct: 84 TEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWS 121
>05_04_0146 + 18393447-18394043
Length = 198
Score = 29.5 bits (63), Expect = 3.2
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +1
Query: 277 SRG*TKCANRLSHPSACLVKTTIPPSPECGCGAERSSCSRCRLIGRWTTSP---TTGRNW 447
+RG TK A + +A + + E GC A RS+CS L G TT+P TG W
Sbjct: 113 ARGRTKAAVAPAAAAAVVAAASAGGGREMGCRAGRSTCS---LHGTTTTTPRWRQTGGPW 169
Query: 448 ILRARR 465
R +
Sbjct: 170 RRRQNK 175
>01_06_1249 -
35714645-35716003,35716700-35716761,35717007-35717181,
35717276-35717301,35717917-35717983,35719803-35719945,
35720337-35720349
Length = 614
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/65 (27%), Positives = 27/65 (41%)
Frame = +1
Query: 376 ERSSCSRCRLIGRWTTSPTTGRNWILRARRPRNLSRTTSRGTEPKRR*KVQPGQDIQVNA 555
ER +C + WT S W+L+ R P LS S+ ++ + K Q +
Sbjct: 137 ERGERGKCSMWTLWTHSQLVVVGWLLKRRPPTKLSELESQLSQLQDELKKAKEQLLSTEH 196
Query: 556 DKRPA 570
KR A
Sbjct: 197 SKRRA 201
>08_01_0656 +
5652383-5653009,5653260-5653736,5654969-5655289,
5655434-5655589,5656062-5656127,5656196-5656315
Length = 588
Score = 29.1 bits (62), Expect = 4.2
Identities = 23/55 (41%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Frame = +1
Query: 289 TKCANRL-SHPS-ACLVKTTIPPSPECGCGAERSSCSRCRLIGRW---TTSPTTG 438
TKC R S P+ A L KT PSP C SC R GRW SP G
Sbjct: 4 TKCPRRKPSRPAGAALRKTGSAPSPTRSCTTSCRSCGR----GRWRAPACSPAAG 54
>12_02_1103 + 26116614-26117607,26118060-26118242,26118344-26119518
Length = 783
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +3
Query: 429 YDWKKLDPSSEETKKLVQDYFSWNGTEKTVESSTRARYSSECRQ 560
+DW + S E KK+ +DY + K V++S Y +C +
Sbjct: 275 HDWAIRNGSCPEGKKVPKDYACVSSNSKCVQASNSQGYLCKCSE 318
>02_05_0713 + 31159574-31160764
Length = 396
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/50 (22%), Positives = 24/50 (48%)
Frame = +3
Query: 318 VCLFGEDNNSTISGVWVWRGKELVFPLSSDWQVDYESYDWKKLDPSSEET 467
+C + + ++S +W W + P SD + S+ W K D + +++
Sbjct: 345 ICAKSKGESFSMSKIWQWSNVKGKLPAGSDNCSETASFPWMKRDATGDKS 394
>04_04_1445 -
33658355-33658417,33658536-33658669,33659056-33659116,
33659197-33659356,33660032-33660081,33662237-33662290,
33662630-33662704,33662821-33662949,33663065-33663152,
33663266-33663372,33663513-33663561,33663657-33663760,
33663941-33663980,33664409-33664659,33664674-33664686,
33665846-33666355,33666437-33667657,33667973-33668221,
33668305-33668531
Length = 1194
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +1
Query: 205 WYAEYKYPEELAKVFMSVTLLRVCSRG*TKCANRLSHPSACLVKTTIPPSPEC 363
W + + +E A+ + LL V R +K N + AC+V +PPS C
Sbjct: 583 WSSPFVKSQEEARTSLFALLLHVAIRLLSK--NDATFRKACMVAAKLPPSSSC 633
>03_02_0173 +
6138406-6138628,6139769-6139857,6139922-6140608,
6140682-6140834,6140922-6141290
Length = 506
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 125 SVSTPTKTK-LNLFLTSGRSLTPRTIPFGMPNTNTLRNSLRC 247
S+ P + K L + + S +PF MPN TL S RC
Sbjct: 291 SIGEPLQMKNLQVIFPNSISFGRAELPFSMPNLETLNISSRC 332
>07_03_1323 +
25813770-25814006,25814147-25814287,25814465-25814536,
25815022-25815135,25815431-25815484,25815644-25815745,
25815830-25815907,25816113-25816182,25816577-25816647,
25816764-25816856,25817306-25817374
Length = 366
Score = 27.9 bits (59), Expect = 9.6
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Frame = +3
Query: 300 KQAFASVCLFGEDNNSTISGVWVWRGKELVFPLSSDWQVDYES-YDWKKLDPSSEETKKL 476
K+A A V L G +T+ G W K + DW + S W + ++ + K++
Sbjct: 42 KKAAAHVDLAGAGGVATVPGSWPRHAKPVSGAELDDWMEKHPSALAWFESVAAAAKGKEI 101
Query: 477 VQDYFSWNGT-EKTVESSTRARYSSECRQ 560
V + ++GT V RA S E R+
Sbjct: 102 VV-FLDYDGTLSPIVADPDRAFMSDEMRE 129
>03_06_0260 -
32717142-32717270,32717743-32717831,32717950-32718039,
32721571-32721596,32721772-32721896
Length = 152
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/38 (31%), Positives = 15/38 (39%)
Frame = -1
Query: 388 TSSFPRHTHTPEMVELLSSPNRQTDAKACLRILSNLWN 275
T +P V + PN D CL IL N W+
Sbjct: 60 TEDYPNKPPVVRFVSRMFHPNIYADGSICLDILQNQWS 97
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,369,827
Number of Sequences: 37544
Number of extensions: 445787
Number of successful extensions: 1332
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1328
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -