Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30826
         (381 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar...   100   7e-23
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...    99   1e-22
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    28   0.57 
SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|...    26   1.7  
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    26   2.3  
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    26   2.3  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    25   3.0  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    25   5.3  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     24   9.3  
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    24   9.3  

>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 189

 Score =  100 bits (240), Expect = 7e-23
 Identities = 48/74 (64%), Positives = 57/74 (77%)
 Frame = +2

Query: 2   IKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQ 181
           I GVT+GF+YKMR VYAHFPIN   TE  +++EIRNFLGE+  R +K  PGVTV  S   
Sbjct: 79  IIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAV 138

Query: 182 KDELIIEGNSLEDV 223
           KDE+IIEGNSLE+V
Sbjct: 139 KDEIIIEGNSLENV 152



 Score = 38.7 bits (86), Expect = 3e-04
 Identities = 16/24 (66%), Positives = 20/24 (83%)
 Frame = +1

Query: 250 IYTVKNKDIRKFLDGLYVSEKTTV 321
           I  V+NKDIRKFLDG+YVSE+  +
Sbjct: 162 ICNVRNKDIRKFLDGIYVSERGNI 185


>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score =   99 bits (238), Expect = 1e-22
 Identities = 47/74 (63%), Positives = 57/74 (77%)
 Frame = +2

Query: 2   IKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQ 181
           I GVT+GF+YKMR VYAHFPIN   TE  +++EIRNFLGE+  R +K  PGVTV  S   
Sbjct: 79  IIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAV 138

Query: 182 KDELIIEGNSLEDV 223
           KDE+I+EGNSLE+V
Sbjct: 139 KDEIILEGNSLENV 152



 Score = 38.7 bits (86), Expect = 3e-04
 Identities = 16/24 (66%), Positives = 20/24 (83%)
 Frame = +1

Query: 250 IYTVKNKDIRKFLDGLYVSEKTTV 321
           I  V+NKDIRKFLDG+YVSE+  +
Sbjct: 162 ICNVRNKDIRKFLDGIYVSERGNI 185


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
            transporting Cta4 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1211

 Score = 27.9 bits (59), Expect = 0.57
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -1

Query: 309  LRYIKTIQELSDILILDCIDCWMRAAELETSSKELPSM-INSSFCLGEL 166
            +++  T   +S +L+  C  C  RA  LET SKE P   I +++ +G +
Sbjct: 1016 IKFGDTQYTISGMLMSVCFYCVSRARPLETLSKERPQAGIFNTYIIGSV 1064


>SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -1

Query: 294 TIQELSDILILDCIDCWMRAAELETSSK 211
           T   + D+   D    WMRAA L T SK
Sbjct: 252 TDDNIPDVSTWDAFQIWMRAAALPTFSK 279


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 324 HNSCFLRYIKTIQELSDILILD 259
           H S  L Y KT++E++ + I+D
Sbjct: 796 HQSSLLPYFKTLKEIAHLFIID 817


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 6/23 (26%), Positives = 16/23 (69%)
 Frame = -3

Query: 172 RVNDSHTRCHLYPSDVFLPQEVT 104
           ++N++++ CH YP  + +P  ++
Sbjct: 152 KINENYSECHSYPQALAVPASIS 174


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = -1

Query: 300 IKTIQELSDILILDCIDCWMRAAELETSSKELPSMINSSFCLGELTTVTPGAIFTLLMYF 121
           I  I  LS+   L+ I+           S    + I+ SFC   LTT+ P   ++ L+YF
Sbjct: 607 ITNIASLSECPKLNSINVACNLLSFYEYSNPSATFIDFSFC--PLTTIDPAFSYSNLVYF 664


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 231 ELETSSKELPSMINSSFCLGELTTVTPGAI 142
           EL TS+   PS   S  CL E+ T+ PG +
Sbjct: 654 ELLTSTFLSPSA-ESQVCLAEIKTIRPGLV 682


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 90  QLLRYVTSWGRNTSEG*RWHLV*LSLTLPNKRM 188
           Q   +VT     TS+   W+LV L L LPN ++
Sbjct: 724 QTFAFVTFNKVCTSQYFMWYLVFLPLVLPNSKL 756


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 191 IHPFVWES*RQSHQVPSLPF 132
           I PF WE   +SH++PS+ F
Sbjct: 387 IEPF-WEEIWKSHELPSIQF 405


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,355,660
Number of Sequences: 5004
Number of extensions: 24436
Number of successful extensions: 67
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)