Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30825
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S...    99   6e-22
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|...    95   7e-21
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    29   0.94 
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ...    27   3.8  
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    27   3.8  
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    26   5.0  
SPAC664.08c |||traub transciption factor family protein |Schizos...    25   8.8  

>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score = 99.1 bits (236), Expect = 6e-22
 Identities = 49/105 (46%), Positives = 73/105 (69%)
 Frame = +1

Query: 205 GNENCFGRIEGKSFRSFLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKL 384
           G +N    ++G+     LADLQ D   E SFRK +L  E +QG++ L +F+G D+T+DKL
Sbjct: 53  GLKNANDSLKGRILEVSLADLQKDE--EHSFRKVKLRVEDIQGKSCLTSFNGFDMTSDKL 110

Query: 385 RWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRRRAT 519
           R +V+KWQ+ IEAN  +KTTDGY+ R+F IGFT++  ++Q ++ T
Sbjct: 111 RSLVRKWQSTIEANQTIKTTDGYLCRIFVIGFTSR-RVNQVKKTT 154



 Score = 75.4 bits (177), Expect = 8e-15
 Identities = 32/50 (64%), Positives = 39/50 (78%)
 Frame = +2

Query: 107 IVDPFTRKDWYDVKAPSMFSKXQVGTTLVNRTQGTKIASEGLKGRVFEVS 256
           +VDPF+RKDWYD+KAP+ F    VG TLVNRT G K A++ LKGR+ EVS
Sbjct: 20  VVDPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVS 69



 Score = 74.9 bits (176), Expect = 1e-14
 Identities = 33/71 (46%), Positives = 50/71 (70%)
 Frame = +3

Query: 507 QTCYAQHTQVRAIRKXMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVC 686
           +T YAQ +Q+RAI + M ++I        ++E+V KLIP+ I + IEKA + IYPL++V 
Sbjct: 152 KTTYAQSSQIRAIHQKMFQVIQNQANGCSMKELVQKLIPEVIGRAIEKATNNIYPLQNVF 211

Query: 687 IRKVKVLKRPR 719
           +RKVK+LK P+
Sbjct: 212 VRKVKILKAPK 222


>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score = 95.5 bits (227), Expect = 7e-21
 Identities = 46/95 (48%), Positives = 66/95 (69%)
 Frame = +1

Query: 205 GNENCFGRIEGKSFRSFLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKL 384
           G +N    ++G+     LADLQ D   E +FRK +L  E +QG++ L +F+G+ +T+DKL
Sbjct: 53  GLKNANDSLKGRILEVSLADLQKDE--EHAFRKVKLRVEDIQGKSCLTSFNGLSITSDKL 110

Query: 385 RWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNK 489
           R +V+KWQT IEA+  +KTTDGY+ RVF IGFT +
Sbjct: 111 RSLVRKWQTTIEADQTIKTTDGYLCRVFVIGFTRR 145



 Score = 77.0 bits (181), Expect = 3e-15
 Identities = 33/71 (46%), Positives = 53/71 (74%)
 Frame = +3

Query: 507 QTCYAQHTQVRAIRKXMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVC 686
           +T YAQ +Q+RAIR+ M ++I    ++  +RE+V KLIP+ I ++IE+A   I+PL++V 
Sbjct: 152 KTTYAQSSQIRAIRQKMFQVIQNQTSSCSMRELVQKLIPEVIGREIERATGSIFPLQNVL 211

Query: 687 IRKVKVLKRPR 719
           +RKVK+LK P+
Sbjct: 212 VRKVKILKAPK 222



 Score = 73.7 bits (173), Expect = 3e-14
 Identities = 31/50 (62%), Positives = 39/50 (78%)
 Frame = +2

Query: 107 IVDPFTRKDWYDVKAPSMFSKXQVGTTLVNRTQGTKIASEGLKGRVFEVS 256
           +VDPF+RK+WYD+KAP+ F    VG TLVNRT G K A++ LKGR+ EVS
Sbjct: 20  VVDPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVS 69


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 13/57 (22%), Positives = 27/57 (47%)
 Frame = +3

Query: 561 EIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFRDL 731
           E +  D     +R++ ++ +   +A ++   C GI  +R+VC R    +     +DL
Sbjct: 387 EFVPPDALEPLVRKIADEFVTSGVANEV--VCAGINAIREVCARAPLAMTPDLLQDL 441


>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 308

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +1

Query: 313 IAEYVQGRNVLCNFHGMDLTTDKLRWMV--KKWQTLIEANIDVKTT 444
           +A   Q R V C  H MDL  + LR +V  ++   L+E + D++TT
Sbjct: 109 VANSPQAR-VFCLIHKMDLVQEDLRDLVFEERKAILLETSKDLETT 153


>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 408 LPFFNHPPELIGCEVHAVEVAEHITS 331
           L    H PEL+ C     +VA+H+TS
Sbjct: 181 LQSMGHSPELVQCITCLPDVADHLTS 206


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
 Frame = +1

Query: 265 LQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIE-ANIDVKT 441
           L+   DAE + + F  I EY++  N        D T  K    + +W ++ E    +   
Sbjct: 106 LKRTKDAEENKKLFEKIIEYIRATNKKVGVFPKDKTQGK---FINEWDSIFEPVKSEFNL 162

Query: 442 TDGYVLRVFCIGFTNKDSLSQRRRAT 519
            D  +    C+   ++  L+  + A+
Sbjct: 163 VDASLGLAKCLAIKDEQELANIKGAS 188


>SPAC664.08c |||traub transciption factor family protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +1

Query: 364 DLTTD-KLRWMVKKWQTLIEANIDVKTTDGYVLR 462
           D T D  +RWM  K Q   + N+D K + G  +R
Sbjct: 351 DSTRDGTVRWMATKKQKQKKENVDTKASKGRKIR 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,042,326
Number of Sequences: 5004
Number of extensions: 62784
Number of successful extensions: 171
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)