Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30825
(753 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 117 1e-26
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 115 4e-26
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 114 6e-26
11_01_0558 - 4396750-4396986,4397699-4398050,4398266-4398504,439... 29 4.0
04_03_0983 + 21423086-21423280,21423330-21423404,21423531-214236... 29 4.0
06_03_0290 - 19193707-19193752,19193822-19194090 28 6.9
10_08_0398 - 17588202-17589280,17590154-17590373,17593350-17593595 28 9.2
02_03_0202 + 16359539-16359763,16360113-16360193,16361362-163616... 28 9.2
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 117 bits (281), Expect = 1e-26
Identities = 60/112 (53%), Positives = 76/112 (67%)
Frame = +1
Query: 229 IEGKSFRSFLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQ 408
++ + F LADLQ D D +++RK RL AE VQG+NVL NF GM TTDKLR +VKKWQ
Sbjct: 61 LKHRVFEVSLADLQNDED--QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQ 118
Query: 409 TLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRRRATPSTLRSEQSERXCVK 564
TLIEA++DVKTTDGY+LR+FCIGFT + +R + Q R V+
Sbjct: 119 TLIEAHVDVKTTDGYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVE 170
Score = 84.2 bits (199), Expect = 1e-16
Identities = 37/49 (75%), Positives = 43/49 (87%)
Frame = +2
Query: 110 VDPFTRKDWYDVKAPSMFSKXQVGTTLVNRTQGTKIASEGLKGRVFEVS 256
VDPF +KDWYD+KAPS+F+ +G TLV+RTQGTKIASEGLK RVFEVS
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVS 69
Score = 84.2 bits (199), Expect = 1e-16
Identities = 36/72 (50%), Positives = 55/72 (76%)
Frame = +3
Query: 507 QTCYAQHTQVRAIRKXMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVC 686
+TCYAQ +Q+R IR+ M EI+ ++ +L+E+V+K IP+ I K+IEKA I+PL++V
Sbjct: 152 RTCYAQASQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVF 211
Query: 687 IRKVKVLKRPRF 722
+RKVK+LK P+F
Sbjct: 212 VRKVKILKAPKF 223
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 115 bits (277), Expect = 4e-26
Identities = 60/112 (53%), Positives = 75/112 (66%)
Frame = +1
Query: 229 IEGKSFRSFLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQ 408
++ + F LADLQ D D +++RK RL AE VQGRNVL NF GM TTDKLR +VKKWQ
Sbjct: 61 LKHRVFEVSLADLQNDED--QAYRKVRLRAEDVQGRNVLTNFWGMSFTTDKLRSLVKKWQ 118
Query: 409 TLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRRRATPSTLRSEQSERXCVK 564
TLIEA++DVKTTD Y+LR+FCIGFT + +R + Q R V+
Sbjct: 119 TLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVE 170
Score = 84.6 bits (200), Expect = 8e-17
Identities = 37/49 (75%), Positives = 44/49 (89%)
Frame = +2
Query: 110 VDPFTRKDWYDVKAPSMFSKXQVGTTLVNRTQGTKIASEGLKGRVFEVS 256
VDPF++KDWYD+KAP++FS +G TLV+RTQGTKIASEGLK RVFEVS
Sbjct: 21 VDPFSKKDWYDIKAPTVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVS 69
Score = 83.0 bits (196), Expect = 2e-16
Identities = 36/72 (50%), Positives = 54/72 (75%)
Frame = +3
Query: 507 QTCYAQHTQVRAIRKXMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVC 686
+TCYAQ +Q+R IR+ M EI+ + +L+E+V+K IP+ I K+IEK+ I+PL++V
Sbjct: 152 RTCYAQASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKSTSSIFPLQNVF 211
Query: 687 IRKVKVLKRPRF 722
IRKVK+LK P+F
Sbjct: 212 IRKVKILKAPKF 223
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 114 bits (275), Expect = 6e-26
Identities = 59/112 (52%), Positives = 75/112 (66%)
Frame = +1
Query: 229 IEGKSFRSFLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQ 408
++ + F LADLQ D D +++RK RL AE VQG+NVL NF GM TTDKLR +VKKWQ
Sbjct: 61 LKHRVFEVSLADLQNDED--QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQ 118
Query: 409 TLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRRRATPSTLRSEQSERXCVK 564
TLIEA++DVKTTD Y+LR+FCIGFT + +R + Q R V+
Sbjct: 119 TLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVE 170
Score = 84.6 bits (200), Expect = 8e-17
Identities = 38/49 (77%), Positives = 43/49 (87%)
Frame = +2
Query: 110 VDPFTRKDWYDVKAPSMFSKXQVGTTLVNRTQGTKIASEGLKGRVFEVS 256
VDPF +KDWYD+KAPS+F+ VG TLV+RTQGTKIASEGLK RVFEVS
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVS 69
Score = 84.2 bits (199), Expect = 1e-16
Identities = 36/72 (50%), Positives = 55/72 (76%)
Frame = +3
Query: 507 QTCYAQHTQVRAIRKXMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVC 686
+TCYAQ +Q+R IR+ M EI+ ++ +L+E+V+K IP+ I K+IEKA I+PL++V
Sbjct: 152 RTCYAQASQIRQIRRKMVEIMVNQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVF 211
Query: 687 IRKVKVLKRPRF 722
+RKVK+LK P+F
Sbjct: 212 VRKVKILKAPKF 223
>11_01_0558 -
4396750-4396986,4397699-4398050,4398266-4398504,
4398608-4398709
Length = 309
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 600 EVVNKLIPDSIAKDIEKACHGIYPLRD 680
++VN IPD + + ++K C IY LR+
Sbjct: 34 QLVNTGIPDDLLERVKKVCSDIYKLRE 60
>04_03_0983 +
21423086-21423280,21423330-21423404,21423531-21423632,
21423721-21423774,21423880-21423972,21424526-21424618,
21427329-21427433,21427517-21427615,21427701-21427997,
21428512-21428622
Length = 407
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Frame = -2
Query: 386 LSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSARKLRKLFPSI-LPKQFS 210
+++ +R+ PW L++ R T +A + +KD SA + +S ++ K+ P + S
Sbjct: 274 ITIREIRNHPWFLKNLPRELTEAAQAMYYKKDNSAPTYSVQSVEEIMKIVEEARTPPRSS 333
Query: 209 FP--GYG*Q 189
P G+G Q
Sbjct: 334 TPVAGFGWQ 342
>06_03_0290 - 19193707-19193752,19193822-19194090
Length = 104
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 344 SATSTAWTSQPISSGGWLKNGRLSSKPTLM 433
+A S A T P S GW+ G S+ P+L+
Sbjct: 67 AAGSAARTRSPSQSNGWITGGSASAMPSLV 96
>10_08_0398 - 17588202-17589280,17590154-17590373,17593350-17593595
Length = 514
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +3
Query: 501 PTQTCYAQHTQVRAIRKXMCEIITRDVTNSELREVVNKLIPDSIAKDIE 647
P Q QH Q++ R + + +D N L+ ++ +IP I KD++
Sbjct: 354 PVQIKDVQHQQIKETRSPVMPVQVKDAQNQLLKGSLSPVIPVQI-KDVQ 401
>02_03_0202 +
16359539-16359763,16360113-16360193,16361362-16361600,
16361828-16362029,16362108-16362188,16362272-16362455,
16362625-16362791,16363020-16363802
Length = 653
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = -3
Query: 274 QLVDQPGNFENSSLQSFRSNFRSLGTVDKRGADLXLAEHRRSLDIVP 134
++ QP N SS + T KRG D +A H + L VP
Sbjct: 256 RMEQQPNNLHLSSYSESSTKDGLTITCSKRGGDASIASHSKWLQTVP 302
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,985,894
Number of Sequences: 37544
Number of extensions: 446180
Number of successful extensions: 1386
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1385
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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