Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30825
         (753 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical pr...   105   3e-23
Z69634-5|CAA93456.1|  731|Caenorhabditis elegans Hypothetical pr...    30   2.0  
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.       28   6.2  
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated...    28   6.2  
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated...    28   6.2  
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated...    28   6.2  
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated...    28   6.2  
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated...    28   6.2  
Z70680-3|CAA94575.1| 1263|Caenorhabditis elegans Hypothetical pr...    28   8.2  
U43562-1|AAC47411.1| 1263|Caenorhabditis elegans DPY-26 protein.       28   8.2  
L25599-3|ABN43087.1|  570|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical
           protein F56F3.5 protein.
          Length = 257

 Score =  105 bits (253), Expect = 3e-23
 Identities = 59/110 (53%), Positives = 75/110 (68%), Gaps = 3/110 (2%)
 Frame = +1

Query: 229 IEGKSFRSFLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQ 408
           ++G+ F   L DL    ++E  FRKF+LIAE VQG+NVL NFH M +T DKL  +VKKW 
Sbjct: 60  LKGRVFEVSLGDLN---NSEADFRKFKLIAEDVQGKNVLTNFHAMSMTHDKLCSIVKKWH 116

Query: 409 TLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRRRAT---PSTLRSEQSE 549
           TLIEAN  VKTTDGY LRVF I FT K S++Q ++ +    S +R  +SE
Sbjct: 117 TLIEANTAVKTTDGYTLRVFVIAFTKK-SVNQVKKTSYTKTSKIRKIRSE 165



 Score = 92.3 bits (219), Expect = 3e-19
 Identities = 40/49 (81%), Positives = 46/49 (93%)
 Frame = +2

Query: 110 VDPFTRKDWYDVKAPSMFSKXQVGTTLVNRTQGTKIASEGLKGRVFEVS 256
           VDPF+RK+WYD+KAP+MF+  QVG TL+NRTQGTKIASEGLKGRVFEVS
Sbjct: 20  VDPFSRKEWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEVS 68



 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 38/71 (53%), Positives = 54/71 (76%)
 Frame = +3

Query: 507 QTCYAQHTQVRAIRKXMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVC 686
           +T Y + +++R IR  M   I ++VT  +L+EVV+KLIPDSI KDIEK C  +YPL++V 
Sbjct: 150 KTSYTKTSKIRKIRSEMIGCIEKEVTGCDLKEVVSKLIPDSIGKDIEKTCSKLYPLQEVY 209

Query: 687 IRKVKVLKRPR 719
           IRKVK++KRP+
Sbjct: 210 IRKVKIIKRPK 220


>Z69634-5|CAA93456.1|  731|Caenorhabditis elegans Hypothetical
           protein B0001.7 protein.
          Length = 731

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +1

Query: 217 CFGRIEGKSFRSFLADLQADTDAERSFRKFRLIAEYVQGRN 339
           C G + G S+   + D +A TD E S +  R IAE+++ R+
Sbjct: 197 CGGSLRGCSWIMSVVDGKAQTDGEFSDKDLREIAEFIRERH 237


>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
          Length = 6632

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 152  PSMFSKXQVGTTLVNRTQGTKI-ASEGLKGRVFEVSWLIYKLTLT 283
            PS   K + G T VN TQGTKI  S  ++G+   V W  YK T T
Sbjct: 4109 PSETLKIKKGLTDVNVTQGTKILLSVEVEGKPKTVKW--YKGTET 4151


>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
            protein 89, isoform e protein.
          Length = 5992

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 152  PSMFSKXQVGTTLVNRTQGTKI-ASEGLKGRVFEVSWLIYKLTLT 283
            PS   K + G T VN TQGTKI  S  ++G+   V W  YK T T
Sbjct: 3469 PSETLKIKKGLTDVNVTQGTKILLSVEVEGKPKTVKW--YKGTET 3511


>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
            protein 89, isoform a protein.
          Length = 6632

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 152  PSMFSKXQVGTTLVNRTQGTKI-ASEGLKGRVFEVSWLIYKLTLT 283
            PS   K + G T VN TQGTKI  S  ++G+   V W  YK T T
Sbjct: 4109 PSETLKIKKGLTDVNVTQGTKILLSVEVEGKPKTVKW--YKGTET 4151


>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
            protein 89, isoform g protein.
          Length = 7122

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 152  PSMFSKXQVGTTLVNRTQGTKI-ASEGLKGRVFEVSWLIYKLTLT 283
            PS   K + G T VN TQGTKI  S  ++G+   V W  YK T T
Sbjct: 4109 PSETLKIKKGLTDVNVTQGTKILLSVEVEGKPKTVKW--YKGTET 4151


>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
            protein 89, isoform f protein.
          Length = 7441

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 152  PSMFSKXQVGTTLVNRTQGTKI-ASEGLKGRVFEVSWLIYKLTLT 283
            PS   K + G T VN TQGTKI  S  ++G+   V W  YK T T
Sbjct: 3469 PSETLKIKKGLTDVNVTQGTKILLSVEVEGKPKTVKW--YKGTET 3511


>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
            protein 89, isoform b protein.
          Length = 8081

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 152  PSMFSKXQVGTTLVNRTQGTKI-ASEGLKGRVFEVSWLIYKLTLT 283
            PS   K + G T VN TQGTKI  S  ++G+   V W  YK T T
Sbjct: 4109 PSETLKIKKGLTDVNVTQGTKILLSVEVEGKPKTVKW--YKGTET 4151


>Z70680-3|CAA94575.1| 1263|Caenorhabditis elegans Hypothetical protein
            C25G4.5 protein.
          Length = 1263

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -2

Query: 413  RVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSAR 255
            R  H    H  LS+  SMP ++  T+RP +  +  L++  + +  +   RS R
Sbjct: 1122 RKVHINGCHTLLSLALSMPSRMGETVRPSSIVSFLLHIANENNLQIVQDRSKR 1174


>U43562-1|AAC47411.1| 1263|Caenorhabditis elegans DPY-26 protein.
          Length = 1263

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -2

Query: 413  RVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSAR 255
            R  H    H  LS+  SMP ++  T+RP +  +  L++  + +  +   RS R
Sbjct: 1122 RKVHINGCHTLLSLALSMPSRMGETVRPSSIVSFLLHIANENNLQIVQDRSKR 1174


>L25599-3|ABN43087.1|  570|Caenorhabditis elegans Hypothetical
           protein F54H12.8 protein.
          Length = 570

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1

Query: 714 ASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSPPP 598
           ASST S     +    R   +P+  PWQ  Q S  +PPP
Sbjct: 104 ASSTTSDPSIPNPTRKRITRQPNYPPWQPHQPSNPNPPP 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,177,288
Number of Sequences: 27780
Number of extensions: 363379
Number of successful extensions: 960
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)