Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30824
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    31   0.12 
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   2.0  
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex...    27   2.0  
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo...    27   2.6  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    27   3.4  
SPBC800.06 |brx1||ribosome biogenesis protein Brx1|Schizosacchar...    26   6.0  
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha...    25   7.9  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    25   7.9  
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p...    25   7.9  

>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = +2

Query: 494 CEVYRS-DAYASTTLISAVVRNTTTFKSSITERAEKCLTALKARCLTSPVRMRDWLFNIM 670
           C  Y    A   + LI  + +N T F   + E+   CL  LK + + SP+ +    F + 
Sbjct: 68  CNYYHDVTADFPSELIELLQKNHTIFPFELCEKIVLCLVLLKNKTVISPITLLQCFFPLF 127

Query: 671 RDMAER 688
           R+   R
Sbjct: 128 RENPTR 133


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 362  CSAGRVCEINEHGDAMCNCIKDC 430
            C+A R+C++ E       C+ DC
Sbjct: 974  CTASRICKVREIASLSLTCLLDC 996


>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
           subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -3

Query: 307 IRDLVEKVVNSGYFCLMVRFSSKLSDIPCSMCSASEMSPRP 185
           +R ++EK   +  FC++  + +K+S    S C+     P P
Sbjct: 140 LRRVIEKYTKNVRFCIICNYINKISPAIQSRCTRFRFQPLP 180


>SPCC1682.03c |mug174||meiotically upregulated gene
           Mug174|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 626

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/63 (25%), Positives = 25/63 (39%)
 Frame = +3

Query: 315 MKTKKSTWKTLA*KSTAAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRI 494
           +K     W +    S A+Q     S  T      A R  P  Q  D+W ++    P + I
Sbjct: 124 LKENIREWSSKFMNSKASQKQQMLSPETMQKVDLAGRASPRYQANDSWISKKRNAPLSSI 183

Query: 495 AKY 503
           ++Y
Sbjct: 184 SQY 186


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -2

Query: 650  PACERGKSDISLSVQSGISRHVP*YSI*TWWYCGP 546
            P C     DI  S+    SR +  ++I  WW  GP
Sbjct: 1627 PLCNFESDDIQYSIDVVYSRKLKEHNIILWWNKGP 1661


>SPBC800.06 |brx1||ribosome biogenesis protein
           Brx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = +2

Query: 500 VYRSDAYASTTLISAVVRN 556
           +Y++D + S+T++ A +RN
Sbjct: 242 IYKNDTFVSSTMVRAAIRN 260


>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 203

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 658 KPVPHANGGSQTSRFQCSQAFL 593
           +P+PH  G  QT RF+ ++ F+
Sbjct: 46  QPLPHTAGRFQTKRFRKARCFI 67


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -3

Query: 442 CLVGTVLDAVTHGVSVFVDFADT-SC 368
           CL+ + LD +T G+S F++  D  SC
Sbjct: 265 CLITSHLDTLTKGISQFIEKRDAHSC 290


>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 658 KPVPHANGGSQTSRFQCSQAFL 593
           +P+PH  G  QT RF+ ++ F+
Sbjct: 46  QPLPHTAGRFQTKRFRKARCFI 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,662,927
Number of Sequences: 5004
Number of extensions: 49187
Number of successful extensions: 160
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)