Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30824
(702 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0322 - 7240125-7241568,7242043-7243253,7245782-7246144,724... 32 0.38
11_06_0344 + 22540436-22540737,22541304-22543545 32 0.51
12_01_0797 + 7300370-7300506,7300682-7300798,7301903-7302443,730... 29 2.7
09_04_0330 + 16731390-16731699,16731774-16732080,16732182-167335... 29 3.6
03_02_0520 + 9092020-9092079,9092253-9093047 29 3.6
06_01_0985 - 7646772-7647451,7647957-7648107 29 4.7
11_01_0014 + 108647-108816,109704-109803,109891-110018,110232-11... 28 6.2
05_05_0203 - 23229538-23229720,23229808-23230007,23230087-232307... 28 6.2
04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431 28 6.2
03_05_0862 + 28353235-28354431 28 6.2
01_07_0219 + 42079095-42079399,42079584-42079728,42081695-420817... 28 6.2
12_02_0318 - 17457182-17462232,17462745-17462955,17463356-174634... 28 8.3
05_06_0246 + 26656629-26656907,26657001-26657228,26657595-266576... 28 8.3
03_01_0643 - 4708245-4708355,4708456-4708800,4709124-4709700,470... 28 8.3
>09_02_0322 - 7240125-7241568,7242043-7243253,7245782-7246144,
7246502-7246522
Length = 1012
Score = 32.3 bits (70), Expect = 0.38
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = -2
Query: 179 LRRWTFSSRGADPAVPTPHTTSVGGANDRDHEGQRKKTLHLAFR*CVSM*SRRQSRRKP 3
LR+ T S+ A PA+P+ TS + DH G +K L + ++ + Q + KP
Sbjct: 950 LRQHTSSALQAQPALPSGPQTSQQPSAQEDHHGDPQKRLQATLQLAATLLQQIQQQSKP 1008
>11_06_0344 + 22540436-22540737,22541304-22543545
Length = 847
Score = 31.9 bits (69), Expect = 0.51
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 563 TFKSSITERAEKCLTALKARCLTSPVRMR 649
T +S ERAE+C + L RC+ P R R
Sbjct: 299 TLQSGFEERAEECFSQLVQRCIIRPARTR 327
>12_01_0797 +
7300370-7300506,7300682-7300798,7301903-7302443,
7302885-7304042,7304133-7304291,7304397-7304504,
7305045-7305304,7305936-7306101,7307025-7307050,
7307318-7307402,7307486-7307695,7308815-7308872,
7308964-7309037,7309323-7309373,7309576-7309664,
7310027-7310104,7310164-7310269
Length = 1140
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = -2
Query: 272 LFLPHGSLLVQALRHSVLDVFSLRDVPAAELLRRWTFSSR 153
+F G L AL+ VLD+ +++ +P+ +L+RWT +R
Sbjct: 485 MFSRTGILCAHALK--VLDLMNIKSLPSQYVLKRWTRGAR 522
>09_04_0330 +
16731390-16731699,16731774-16732080,16732182-16733561,
16734064-16734112
Length = 681
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 353 KVHCSAGRVCEINEHGDAMCNCIKDCPYETDSRRMVCTNFNETWQ 487
K +A VCE + G+ + +C + D RM C + E WQ
Sbjct: 602 KEEAAAAAVCEGSGGGERVVDCACGA-VDDDGERMACCDICEAWQ 645
>03_02_0520 + 9092020-9092079,9092253-9093047
Length = 284
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = -2
Query: 257 GSLLVQALRHSVLDVFSLRDVPAAELLRRWTFSSR 153
G L AL+ VLD+ +++ +PA +L+RWT +R
Sbjct: 129 GILCGHALK--VLDLMNIKSLPAQYILKRWTREAR 161
>06_01_0985 - 7646772-7647451,7647957-7648107
Length = 276
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -2
Query: 257 GSLLVQALRHSVLDVFSLRDVPAAELLRRWTFSSR 153
G L AL+ VLDV +++ +P +L+RWT +R
Sbjct: 231 GILCSHALK--VLDVMNIKSLPKRYILKRWTREAR 263
>11_01_0014 +
108647-108816,109704-109803,109891-110018,110232-110394,
110491-110603,111080-111118,111319-111402,111486-111534,
111624-111715,111999-112128,112225-112301,112377-113995,
114348-114545,114635-115173
Length = 1166
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +3
Query: 339 KTLA*KSTAAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKP 482
+T A ++Q ++ T+ ++ ++S TV + + P +W TST P
Sbjct: 390 RTTATGVASSQSLTKSKTDPQSNSFSSSSTVSSTKLPSSWNDDTSTVP 437
>05_05_0203 -
23229538-23229720,23229808-23230007,23230087-23230718,
23231493-23231844,23231926-23232136,23232413-23232472
Length = 545
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -2
Query: 257 GSLLVQALRHSVLDVFSLRDVPAAELLRRWTFSSR 153
G L AL+ +LDV +++ VP +L+RWT ++
Sbjct: 310 GILCSHALK--ILDVNNIKSVPQQYILKRWTIDAK 342
>04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431
Length = 370
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -2
Query: 257 GSLLVQALRHSVLDVFSLRDVPAAELLRRWTFSSR 153
G L AL+ VLD+ ++ +PA +L+RWT +R
Sbjct: 187 GILCGHALK--VLDLMNIESLPAQYILKRWTREAR 219
>03_05_0862 + 28353235-28354431
Length = 398
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 535 QSCRGISIAAVYFAIRLPGFVEVCAH 458
+ C G+ + VYFA+ L G VCA+
Sbjct: 335 RECPGLRPSTVYFAVDLAGETRVCAY 360
>01_07_0219 +
42079095-42079399,42079584-42079728,42081695-42081739,
42082150-42082265,42082913-42083012,42083103-42083138,
42083301-42083351,42083431-42083565
Length = 310
Score = 28.3 bits (60), Expect = 6.2
Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Frame = -3
Query: 499 FAIRLPGFVEVCAHHASGVCLVGT-VLDAVTHGVSVFVDFADTSCAAVDFQARVFHVDFF 323
F + + + V + ++G L GT +L + +S F+ ADT + F +
Sbjct: 192 FLVTVGVIITVASGSSAGASLKGTGILWPLLMIISFFLQAADTVLKEIIFLNAAKKLKGG 251
Query: 322 VFILFIRDLVEKVVNSGYFCLMVRFSSKLSDIP 224
LF+ + + + CL++ F SKL +P
Sbjct: 252 SVDLFVVNSYGSAYQALFMCLLLPFLSKLWGVP 284
>12_02_0318 - 17457182-17462232,17462745-17462955,17463356-17463403,
17466161-17466346
Length = 1831
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Frame = -3
Query: 409 HGVSVFVDFADTSCAAVDF------QARVFHVDFFVFILFIRDLVEKVVNSGYF 266
HG+ V +FAD S V++ + V+ F + FIR+L E + S F
Sbjct: 984 HGIGVQFEFADASVHIVNYLMSKSSNGALSRVNMFAMLQFIRNLTENNLTSVNF 1037
>05_06_0246 +
26656629-26656907,26657001-26657228,26657595-26657630,
26658362-26658475,26658562-26659167
Length = 420
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 247 SSKLSDIPCSMCSASEMSPRPSCSDVG 167
S+ SD PC + SAS S P+ SD G
Sbjct: 310 SASSSDFPCDVSSASTSSATPARSDGG 336
>03_01_0643 -
4708245-4708355,4708456-4708800,4709124-4709700,
4709780-4710462,4710618-4710980,4712199-4712530,
4712856-4713048,4713748-4713790,4713964-4714052,
4714186-4714301,4714816-4714935,4715538-4715577
Length = 1003
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/63 (23%), Positives = 28/63 (44%)
Frame = +1
Query: 445 LQTHGVHKLQRNLAIGLRSIPQRCLCLDNSDQCRGPQYHHVQIEYYGTCREMPDCTESEM 624
L + V +L+ + G +P + D++ C P + ++ +Y TC C+E
Sbjct: 440 LSSDEVKRLKWSCMFGEFEVPAEIIA-DDTLVCHSPSHKPGRVPFYVTCSNRLACSEVRE 498
Query: 625 SDF 633
DF
Sbjct: 499 FDF 501
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,582,917
Number of Sequences: 37544
Number of extensions: 395702
Number of successful extensions: 1188
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1188
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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