Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30822
(760 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 124 1e-29
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 123 3e-29
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 101 8e-23
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 84 2e-17
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 80 4e-16
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 33 0.058
SPBC16C6.05 |||translation initiation factor |Schizosaccharomyce... 31 0.13
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 30 0.31
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 29 0.72
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 28 1.3
SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc... 28 1.7
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 27 2.2
SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyce... 27 2.9
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 27 2.9
SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch... 27 3.8
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 27 3.8
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 27 3.8
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 26 5.1
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 5.1
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 26 5.1
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 26 6.7
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch... 26 6.7
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo... 25 8.9
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 25 8.9
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 124 bits (300), Expect = 1e-29
Identities = 57/82 (69%), Positives = 71/82 (86%)
Frame = +1
Query: 256 IEVTFDIDANGILNVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQK 435
IEVTFD+DANGILNVSA+EK T K KITITNDKGRLSKEEI+RMV+EAEKY+ ED+ +
Sbjct: 472 IEVTFDVDANGILNVSALEKGTGKTQKITITNDKGRLSKEEIDRMVSEAEKYKAEDEAET 531
Query: 436 ETIQAKNALESYCFSMKSTMED 501
IQAKN LESY +S++++++D
Sbjct: 532 SRIQAKNHLESYAYSLRNSLDD 553
Score = 111 bits (267), Expect = 1e-25
Identities = 54/73 (73%), Positives = 57/73 (78%)
Frame = +2
Query: 41 GIETAGGVMTTLIKRNXXXXXXXXXXXXXYSDNQPGVLIQVFEGERAMTKDNNLLGKFEL 220
GIETAGGVMT LIKRN Y+DNQPGVLIQVFEGERA TKD NLLGKFEL
Sbjct: 400 GIETAGGVMTPLIKRNTTIPTKKSEVFSTYADNQPGVLIQVFEGERARTKDCNLLGKFEL 459
Query: 221 TGIPPAPRGVPQL 259
+GIPPAPRGVPQ+
Sbjct: 460 SGIPPAPRGVPQI 472
Score = 75.8 bits (178), Expect = 6e-15
Identities = 35/61 (57%), Positives = 44/61 (72%)
Frame = +3
Query: 510 KEKISDSDKQTILDKCNDTIKWLDSNQLADKEEYEHKQKELEGIYNPIITKMYQGAGGVP 689
K+K+ SDK+ I +TI+WLD N A K+EYE KQKELEG+ NPI+ K+YQ AGG P
Sbjct: 557 KDKVDASDKEAIDKAVKETIEWLDHNTTAAKDEYEDKQKELEGVANPIMAKIYQ-AGGAP 615
Query: 690 G 692
G
Sbjct: 616 G 616
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 123 bits (296), Expect = 3e-29
Identities = 57/82 (69%), Positives = 70/82 (85%)
Frame = +1
Query: 256 IEVTFDIDANGILNVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQK 435
IEVTFD+DANGILNVSA+EK T K KITITNDKGRLSKEEI+RMV EAEKY+ ED+ +
Sbjct: 472 IEVTFDVDANGILNVSALEKGTGKTQKITITNDKGRLSKEEIDRMVAEAEKYKAEDEAES 531
Query: 436 ETIQAKNALESYCFSMKSTMED 501
IQAKN LESY +S++++++D
Sbjct: 532 GRIQAKNHLESYAYSLRNSLDD 553
Score = 112 bits (270), Expect = 5e-26
Identities = 55/73 (75%), Positives = 57/73 (78%)
Frame = +2
Query: 41 GIETAGGVMTTLIKRNXXXXXXXXXXXXXYSDNQPGVLIQVFEGERAMTKDNNLLGKFEL 220
GIETAGGVMT LIKRN YSDNQPGVLIQVFEGERA TKD NLLGKFEL
Sbjct: 400 GIETAGGVMTPLIKRNTTIPTKKSEIFSTYSDNQPGVLIQVFEGERARTKDCNLLGKFEL 459
Query: 221 TGIPPAPRGVPQL 259
+GIPPAPRGVPQ+
Sbjct: 460 SGIPPAPRGVPQI 472
Score = 74.9 bits (176), Expect = 1e-14
Identities = 34/61 (55%), Positives = 45/61 (73%)
Frame = +3
Query: 510 KEKISDSDKQTILDKCNDTIKWLDSNQLADKEEYEHKQKELEGIYNPIITKMYQGAGGVP 689
K+K+ SDK+T+ +TI+WLDSN A K+E+E KQKELE + NPI+ K+YQ AGG P
Sbjct: 557 KDKVDASDKETVDKAVKETIEWLDSNTTAAKDEFEAKQKELESVANPIMAKIYQ-AGGAP 615
Query: 690 G 692
G
Sbjct: 616 G 616
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 101 bits (243), Expect = 8e-23
Identities = 47/85 (55%), Positives = 65/85 (76%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 IEVTFDIDANGILNVSAIEKS-TNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQ 432
IEVTF++DANG+L VSA++KS K K+ I NDKGRLS+E+IERMV EAE++ ED
Sbjct: 501 IEVTFEVDANGVLTVSAVDKSGKGKPEKLVIKNDKGRLSEEDIERMVKEAEEFAEEDKIL 560
Query: 433 KETIQAKNALESYCFSMKSTMEDEK 507
KE I+A+N LE+Y +S+K +D++
Sbjct: 561 KERIEARNTLENYAYSLKGQFDDDE 585
Score = 95.5 bits (227), Expect = 7e-21
Identities = 47/73 (64%), Positives = 51/73 (69%)
Frame = +2
Query: 41 GIETAGGVMTTLIKRNXXXXXXXXXXXXXYSDNQPGVLIQVFEGERAMTKDNNLLGKFEL 220
GIET GGVMT LI RN DNQ VLIQV+EGER +TKDNNLLGKF+L
Sbjct: 429 GIETTGGVMTKLIGRNTPIPTRKSQIFSTAVDNQNTVLIQVYEGERTLTKDNNLLGKFDL 488
Query: 221 TGIPPAPRGVPQL 259
GIPPAPRGVPQ+
Sbjct: 489 RGIPPAPRGVPQI 501
Score = 49.2 bits (112), Expect = 6e-07
Identities = 22/57 (38%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Frame = +3
Query: 516 KISDSDKQTILDKCNDTIKWLDSN-QLADKEEYEHKQKELEGIYNPIITKMY-QGAG 680
K+ DKQ +LD D +WL+ + + A KEE+E ++++L+ + +PI K+Y +GAG
Sbjct: 590 KVDPEDKQAVLDAVEDVAEWLEIHGEDASKEEFEDQRQKLDAVVHPITQKLYSEGAG 646
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 83.8 bits (198), Expect = 2e-17
Identities = 41/86 (47%), Positives = 59/86 (68%)
Frame = +1
Query: 256 IEVTFDIDANGILNVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQK 435
IEV+FD+DA+GI+NVSA +K+TNK++ IT+ G L+ EIE MV +AEKYR D +K
Sbjct: 515 IEVSFDVDADGIINVSARDKATNKDSSITVAGSSG-LTDSEIEAMVADAEKYRASDMARK 573
Query: 436 ETIQAKNALESYCFSMKSTMEDEKPR 513
E I+ N ES C ++S ++ K +
Sbjct: 574 EAIENGNRAESVCTDIESNLDIHKDK 599
Score = 76.2 bits (179), Expect = 5e-15
Identities = 36/73 (49%), Positives = 45/73 (61%)
Frame = +2
Query: 41 GIETAGGVMTTLIKRNXXXXXXXXXXXXXYSDNQPGVLIQVFEGERAMTKDNNLLGKFEL 220
GIET GGV T LI RN +D Q V I+VF+GER + +DN L+G F+L
Sbjct: 443 GIETLGGVFTRLINRNTTIPTRKSQVFSTAADGQTAVEIRVFQGERELVRDNKLIGNFQL 502
Query: 221 TGIPPAPRGVPQL 259
TGI PAP+G PQ+
Sbjct: 503 TGIAPAPKGQPQI 515
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 79.8 bits (188), Expect = 4e-16
Identities = 34/85 (40%), Positives = 59/85 (69%)
Frame = +1
Query: 247 RASIEVTFDIDANGILNVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDD 426
+A +E TF++DANGIL V+A+EK+T + I ITN G LS +I+ M+ A+K++ +D
Sbjct: 474 QAELEATFELDANGILKVTAVEKTTGRSAHIEITNSVGHLSSTKIQEMIENADKFKQQDK 533
Query: 427 KQKETIQAKNALESYCFSMKSTMED 501
+ ++AK+ LESY ++++T+ +
Sbjct: 534 DFAKKLEAKSQLESYISNIETTISE 558
Score = 54.4 bits (125), Expect = 2e-08
Identities = 27/73 (36%), Positives = 36/73 (49%)
Frame = +2
Query: 41 GIETAGGVMTTLIKRNXXXXXXXXXXXXXYSDNQPGVLIQVFEGERAMTKDNNLLGKFEL 220
G+ G V + RN +DNQ V V++GER +N LG+F+L
Sbjct: 405 GVAMEGNVFGVVCPRNTPIPTIKKRTFTTVADNQTTVTFPVYQGERVNCAENEPLGEFQL 464
Query: 221 TGIPPAPRGVPQL 259
TGIPP PRG +L
Sbjct: 465 TGIPPMPRGQAEL 477
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 32.7 bits (71), Expect = 0.058
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +1
Query: 313 KSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQ-KETIQAKNALESYCFSMKS 489
K K ++++ + RL E +E+ EAE DK ET+ KNALE Y + ++
Sbjct: 534 KKLVKVADLSVSVQEDRLPTEVLEKY-REAEHQMIATDKLVAETVDRKNALEEYIYDTRA 592
Query: 490 TMED 501
++D
Sbjct: 593 KLDD 596
>SPBC16C6.05 |||translation initiation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 190
Score = 31.5 bits (68), Expect = 0.13
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +1
Query: 277 DANGILNVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKE--TIQA 450
D LNVS + S +E +T ++ R+ +EE +RM ++ E K+K T+Q
Sbjct: 58 DLENTLNVSGTKDSNAEEQPAKLTKEEKRVEREEAKRMASKVLIKTIERTKRKRVTTVQG 117
Query: 451 KNA 459
+A
Sbjct: 118 LDA 120
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 30.3 bits (65), Expect = 0.31
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 507 AKEKISDSDKQTILD-KCNDTIKWLDSNQLADKEEYEHKQKELE 635
A+EKI +++TI D K + + ++ EEY KQKEL+
Sbjct: 426 AEEKIDSDEEETIDDAKSEMFVDLSEEEEVRQYEEYRKKQKELQ 469
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 29.1 bits (62), Expect = 0.72
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +1
Query: 355 KGRLSKEEIERMVNEAEKYRNEDD 426
KG LSKEE+ER V +A K N D
Sbjct: 525 KGTLSKEELERRVYDAAKLANAYD 548
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 28.3 bits (60), Expect = 1.3
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +1
Query: 322 NKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCF 477
NK+ K T D SKEE+E +V E E D +Q + K+ L++ F
Sbjct: 529 NKKGKHTQIEDPTAASKEELENLVREDE----NDSEQLDHFDMKSILKAEKF 576
>SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 292 LNVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNED 423
L VS ++S K + + K EE+E VNE E++R D
Sbjct: 257 LCVSPEKRSLAKTREAVLAVTKWTTDDEELESFVNEEEEFRASD 300
>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +3
Query: 285 RYPQRFRYREVHQQGEQDHHYQRQRSS-LQGRDRAY 389
R P R +YRE H + + H R QGR +Y
Sbjct: 320 RDPDRTKYREYHSERRKQHRTDRYSDDYYQGRSYSY 355
>SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 122
Score = 27.1 bits (57), Expect = 2.9
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +1
Query: 313 KSTNKE--NKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMK 486
K+T K+ +T+ N+ RL+ E + +KY D +QK+T + AL Y S K
Sbjct: 47 KTTRKDIARILTVINESNRLAAREAYKN----KKYIPLDLRQKKTRAIRRALTPYEQSRK 102
Query: 487 STMEDEKPR 513
+ + +K R
Sbjct: 103 TLKQIKKER 111
>SPBC16A3.11 |eso1||sister chromatid cohesion protein
Eso1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +1
Query: 388 MVNEAEKYRNEDDKQKETIQAKNALESYCFSMKST 492
M+++ RN+ +KQ TI KNA++ Y S+K T
Sbjct: 247 MLSKLVSSRNKPNKQ--TILTKNAIQDYLVSLKIT 279
>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 509
Score = 26.6 bits (56), Expect = 3.8
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +1
Query: 283 NGILNVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAE-KYRNEDDKQKETIQAKNA 459
+GIL+ + IEK +K K+ + N+ SK+ + + + +E DK KN
Sbjct: 154 DGILSFTVIEKVDDKNLKVRVNNNGKISSKKGVNLPKTDVDLPALSEKDKADLRFGVKNG 213
Query: 460 LESYCFSMKSTMED 501
++ S ED
Sbjct: 214 VDMIFASFIRRAED 227
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/54 (24%), Positives = 28/54 (51%)
Frame = +1
Query: 298 VSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNA 459
V A+ KS +++ ++ G + EEI ++++ E E+D++ E N+
Sbjct: 597 VPALFKSIDQDESDILSERIGAPTAEEISQLLDSVETNEEENDEELEKAMGVNS 650
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 26.6 bits (56), Expect = 3.8
Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = +1
Query: 328 ENKITITNDKGRLSKEEIERM-VNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTME 498
++++TIT++ S E++E++ N AEK + E + K + ++ LES S + +E
Sbjct: 288 KSQMTITDE----SSEDLEKLHSNFAEKVKEEQELYKSLEKKRSDLESLLKSRRELLE 341
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 26.2 bits (55), Expect = 5.1
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +3
Query: 87 TLPSPLNRLRHSPPTLITNPEYSSKYLR 170
T P RLRH+P I E KYLR
Sbjct: 43 TYGQPFKRLRHAPEKYIEFLELRLKYLR 70
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.2 bits (55), Expect = 5.1
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +1
Query: 355 KGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKPRK 516
+GR + + N+ E + DDKQ + KN+LE+ M+ + E K
Sbjct: 1259 RGRQKTSIVAKYRNKRELPEDSDDKQDTASKDKNSLETIDEKMEDASKIEGDAK 1312
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +1
Query: 367 SKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKS 489
S+ E +++ E ++ ED+KQ E + K AL+ +C +++
Sbjct: 299 SETEQQQLFFEYKQKLLEDEKQLEKDRRKEALDDFCSLLRN 339
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +1
Query: 355 KGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALE 465
+G L E E NEA++ NE+ E +N E
Sbjct: 89 EGELKLENFENQENEADEAENEETSYSEQNHTENTEE 125
>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 703
Score = 25.8 bits (54), Expect = 6.7
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +1
Query: 316 STNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQK--ETIQAKNALESYCF 477
+TNK N + N L EEI V + E + DD+ + E +A ++ E Y F
Sbjct: 46 NTNKHNVYSTKNSMYLLGFEEILNTVLDCEPHIFTDDELRVIENFKALDSDERYLF 101
>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 313 KSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKET 441
K NK+++ + +K +L +E+ AEK N DDK + T
Sbjct: 39 KQKNKKSRNQVRREKKKLLREKTNSGAKLAEK--NSDDKDQLT 79
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +1
Query: 283 NGILNVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNED 423
N + N S +KS+NKE + + RLS + + K ++ED
Sbjct: 409 NTVQNESKSQKSSNKEGRSSRGGFFSRLSFSRSSSRMKKGSKAKHED 455
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,836,805
Number of Sequences: 5004
Number of extensions: 54810
Number of successful extensions: 281
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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