Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30820
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha...   138   6e-34
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p...   138   6e-34
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz...    38   0.002
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    29   0.53 
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    29   0.70 
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    29   0.70 
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma...    27   2.1  
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    27   3.8  
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    27   3.8  
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...    25   8.7  

>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 203

 Score =  138 bits (335), Expect = 6e-34
 Identities = 69/89 (77%), Positives = 75/89 (84%)
 Frame = +3

Query: 255 RYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVT 434
           R+  KRFRKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHAFEII LLT +NPLQVLV 
Sbjct: 54  RFQTKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVD 113

Query: 435 AIINSGPREDSTRIGRAGTVRRQAVMFHP 521
           A+   GPREDSTRIG AGTVRRQAV   P
Sbjct: 114 AVAACGPREDSTRIGSAGTVRRQAVDVSP 142



 Score =  100 bits (239), Expect = 3e-22
 Identities = 47/58 (81%), Positives = 55/58 (94%)
 Frame = +2

Query: 530 VNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 703
           VNQA+ L+  GAREAAFRN+K+I+EC+A+E+INAAKGSSNSYAIKKKDELERVAKSNR
Sbjct: 146 VNQALALITIGAREAAFRNVKSISECLAEEIINAAKGSSNSYAIKKKDELERVAKSNR 203



 Score = 37.5 bits (83), Expect = 0.002
 Identities = 22/61 (36%), Positives = 35/61 (57%)
 Frame = +1

Query: 85  AGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGGMH 264
           A S++ + +SL +      IKLF ++    V+V D+SL DYI++     + LPH+AG   
Sbjct: 2   AASIIPKEVSLDETG---HIKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQ 56

Query: 265 T 267
           T
Sbjct: 57  T 57


>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score =  138 bits (335), Expect = 6e-34
 Identities = 69/89 (77%), Positives = 75/89 (84%)
 Frame = +3

Query: 255 RYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVT 434
           R+  KRFRKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHAFEII LLT +NPLQVLV 
Sbjct: 54  RFQTKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVD 113

Query: 435 AIINSGPREDSTRIGRAGTVRRQAVMFHP 521
           A+   GPREDSTRIG AGTVRRQAV   P
Sbjct: 114 AVAACGPREDSTRIGSAGTVRRQAVDVSP 142



 Score =  100 bits (239), Expect = 3e-22
 Identities = 47/58 (81%), Positives = 55/58 (94%)
 Frame = +2

Query: 530 VNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 703
           VNQA+ L+  GAREAAFRN+K+I+EC+A+E+INAAKGSSNSYAIKKKDELERVAKSNR
Sbjct: 146 VNQALALITIGAREAAFRNVKSISECLAEEIINAAKGSSNSYAIKKKDELERVAKSNR 203



 Score = 35.1 bits (77), Expect = 0.011
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
 Frame = +1

Query: 106 TMSLPQAADIPE---IKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGGMHT 267
           T SL     + E   IKLF ++    V+V D+SL DYI++     + LPH+AG   T
Sbjct: 3   TSSLTPGVSLDENGSIKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQT 57


>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
           S7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 23/53 (43%), Positives = 28/53 (52%)
 Frame = +3

Query: 297 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGP 455
           V+ L N +M     +GKK  A +IV  A  II   TGENP+ VL  AI    P
Sbjct: 126 VQHLVNLIM----RDGKKAKAEKIVATALSIIQKETGENPIDVLKQAIAEISP 174


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1136

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 246  FSWRYAHKRFRKAQCPIVERLT 311
            FSWRY H+ +R A   I E+L+
Sbjct: 1024 FSWRYKHQNYRDAAAIIYEKLS 1045


>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 707

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 549 SQIAWLTRRKGETSRLDDELYP 484
           SQ AWL+R KG  S L   +YP
Sbjct: 445 SQAAWLSREKGVASELQSLVYP 466


>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 356 GRTYCQTCV*NYSLVNWRKPSASTRDCHYQLWT 454
           G TYC  C     L+NW K S S   C  +L+T
Sbjct: 101 GHTYCYEC-----LLNWLKESKSCPTCRQKLYT 128


>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 614

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/52 (28%), Positives = 30/52 (57%)
 Frame = +3

Query: 579 SEILKQSQSVLQMN*LMQLRVHLTPTPSKRRTSWSVLLNPTVKIYYLSHLYN 734
           +++L++++ VLQ    +  R +LTPT         V  NP + + +++HL+N
Sbjct: 317 TDVLQRAEQVLQNAEKLDCRKYLTPTA-------MVAGNPKLNLAFVAHLFN 361


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 630 QLRVHLTPTPSKRRTSWSVLLNPTV 704
           Q ++H  P P +RR S + L NP++
Sbjct: 124 QQKIHRNPQPRRRRRSTTALPNPSL 148


>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +3

Query: 429 VTAIINSGPREDSTRIGRAGT-VRRQAVMFHPCAESTKQSGFCAQVHVRLHSEILKQSQS 605
           VT+    G R  S    + G   RRQA M+   +   +++ +  + H R  +  +K  QS
Sbjct: 340 VTSYSRPGRRPRSMTAPKGGARTRRQAAMYSNSSSGIRETMYDLKPHRRKDAAEMKFCQS 399

Query: 606 VLQ 614
           VL+
Sbjct: 400 VLK 402


>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
 Frame = +1

Query: 121 QAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLP----HSAGGMHTSV 273
           + ADI  +  FGR    ++++++  +   I+V+EKYAK  P      AG +H ++
Sbjct: 7   KVADI-SLAAFGR---KELEIAENEMPGLIAVREKYAKSQPLKGARIAGCLHMTI 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,034,039
Number of Sequences: 5004
Number of extensions: 61149
Number of successful extensions: 175
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)