Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30820
(746 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300... 155 3e-38
01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419 155 5e-38
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57... 29 5.2
03_06_0610 + 35052455-35053429,35054936-35055511 29 5.2
12_02_0611 + 21118777-21119066,21119501-21119594,21119742-211201... 28 6.9
06_02_0103 - 11829343-11829699,11831560-11831826,11832239-118325... 28 9.1
>11_04_0317 -
16328558-16328612,16328698-16328901,16329794-16330065,
16330152-16330220
Length = 199
Score = 155 bits (377), Expect = 3e-38
Identities = 74/89 (83%), Positives = 79/89 (88%)
Frame = +3
Query: 255 RYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVT 434
RY+ KRFRKAQCPIVERLTNSLMMHGRNNGKK+MAVRIVKHA EIIHLLT NP+QV+V
Sbjct: 50 RYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVD 109
Query: 435 AIINSGPREDSTRIGRAGTVRRQAVMFHP 521
AIINSGPRED+TRIG AG VRRQAV P
Sbjct: 110 AIINSGPREDATRIGSAGAVRRQAVDISP 138
Score = 108 bits (260), Expect = 4e-24
Identities = 52/58 (89%), Positives = 57/58 (98%)
Frame = +2
Query: 530 VNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 703
VNQAI+LL TGARE+AFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 142 VNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 199
Score = 55.6 bits (128), Expect = 4e-08
Identities = 25/40 (62%), Positives = 32/40 (80%), Gaps = 1/40 (2%)
Frame = +1
Query: 139 EIKLFGRWSCYDVQVSDMSLQDYISVK-EKYAKYLPHSAG 255
E+KLF RWS DVQV+D+SL DY++V K+A YLPH+AG
Sbjct: 10 EVKLFSRWSFEDVQVNDISLADYLAVNPTKHATYLPHTAG 49
>01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419
Length = 200
Score = 155 bits (375), Expect = 5e-38
Identities = 73/89 (82%), Positives = 79/89 (88%)
Frame = +3
Query: 255 RYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVT 434
RY+ KRFRKAQCP+VERLTNSLMMHGRNNGKK+MAVRIVKHA EIIHLLT NP+QV+V
Sbjct: 51 RYSAKRFRKAQCPLVERLTNSLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVD 110
Query: 435 AIINSGPREDSTRIGRAGTVRRQAVMFHP 521
AIINSGPRED+TRIG AG VRRQAV P
Sbjct: 111 AIINSGPREDATRIGSAGAVRRQAVDISP 139
Score = 108 bits (260), Expect = 4e-24
Identities = 52/58 (89%), Positives = 57/58 (98%)
Frame = +2
Query: 530 VNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 703
VNQAI+LL TGARE+AFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 143 VNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 200
Score = 50.8 bits (116), Expect = 1e-06
Identities = 23/39 (58%), Positives = 30/39 (76%), Gaps = 1/39 (2%)
Frame = +1
Query: 142 IKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAG 255
+KLF WS DVQV+D+SL DY++V K+A YLPH+AG
Sbjct: 12 VKLFNCWSFEDVQVNDISLADYLAVSSTKHATYLPHTAG 50
>07_01_0077 +
566895-567127,567207-567331,571204-571340,571437-571542,
571635-571885,572018-572128,572209-572320,572626-572716,
573168-573507,573678-573900,573946-574204,574274-574481,
574572-574622,574712-574870,574956-575120,575322-575399,
575732-576031,576107-576259,576871-576918,577019-577188,
577738-577852,578462-578623,578789-578893,578969-579199,
579277-579410,579484-579738,579822-580110,580214-580306,
580395-580520,580646-580897
Length = 1693
Score = 28.7 bits (61), Expect = 5.2
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 74 T*PRQAAWLWKPCLYHKPPTF 136
T P Q +WLW+ L H P F
Sbjct: 88 TDPSQCSWLWREVLKHNPDAF 108
>03_06_0610 + 35052455-35053429,35054936-35055511
Length = 516
Score = 28.7 bits (61), Expect = 5.2
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = -3
Query: 192 HIRDLHIVATPSAEKLDFR---NVGGLW*RHGFHN-HAACLGYVVIPVLLGHDWYFSITK 25
++ ++V TP A L F GGLW +G + AAC+ V++ V+ DW+ +
Sbjct: 418 NLLSFYLVGTPVAVTLAFGARVGFGGLW--YGLLSAQAACVALVLLAVVWRTDWHLEALR 475
Query: 24 *K 19
K
Sbjct: 476 AK 477
>12_02_0611 +
21118777-21119066,21119501-21119594,21119742-21120182,
21120267-21120866
Length = 474
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +3
Query: 369 VKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVMFHPCAESTKQSG 548
++H + + LL NP++ + I + +E +GRAG ++++ + C ES G
Sbjct: 75 IRHGWSMRDLLL--NPIEEVA---IPARGKEKVGEVGRAGAMQKEEIKCFNCGESGHHQG 129
Query: 549 F 551
F
Sbjct: 130 F 130
>06_02_0103 -
11829343-11829699,11831560-11831826,11832239-11832559,
11833783-11833844,11835413-11835446,11835539-11835619
Length = 373
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/57 (28%), Positives = 31/57 (54%)
Frame = +1
Query: 73 DVAEAGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLP 243
++ G +VV L + +D P+ +L W+ +SDM+L+ IS ++ + Y+P
Sbjct: 215 EIVPGGRMVVSL--LVKRSDKPDTELIQPWTPAVTALSDMALRGVISKEKLDSFYIP 269
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,792,833
Number of Sequences: 37544
Number of extensions: 405009
Number of successful extensions: 1023
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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