Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30819
         (428 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0492 - 10907529-10907629,10907714-10907953,10908035-109080...    30   0.91 
02_02_0490 - 10879761-10879861,10879946-10880185,10880274-108803...    29   1.2  
01_06_0468 - 29582506-29583147,29583313-29583600                       29   1.2  
01_07_0166 + 41595729-41595735,41595914-41596863                       27   6.4  
01_01_0517 + 3803740-3806106,3806226-3806312,3806397-3807035,380...    27   6.4  
08_01_0572 + 5090474-5090787,5090973-5091000,5092725-5092837,509...    27   8.5  

>02_02_0492 - 10907529-10907629,10907714-10907953,10908035-10908098,
            10908416-10908721,10909347-10909561,10909656-10909950,
            10910493-10910597,10911112-10911180,10911433-10911519,
            10911953-10913704,10914964-10915054,10915217-10915488
          Length = 1198

 Score = 29.9 bits (64), Expect = 0.91
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -2

Query: 154  LTCR*AHGAQTGIVANTGPSKSRVRRIYHRIGNP 53
            LTC    G +TGIV  TG  KS + +   RI +P
Sbjct: 976  LTCTLPRGLRTGIVGRTGNGKSTLIQALFRIVDP 1009


>02_02_0490 - 10879761-10879861,10879946-10880185,10880274-10880337,
            10880426-10880731,10881098-10881312,10881417-10881711,
            10882193-10882357,10882477-10882527,10882657-10883109,
            10883195-10883281,10883736-10884800,10884858-10885376
          Length = 1186

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -2

Query: 154  LTCR*AHGAQTGIVANTGPSKSRVRRIYHRIGNPT 50
            LTC    G +TGIV  TG  KS + +   RI  P+
Sbjct: 964  LTCTLPGGLKTGIVGRTGSGKSTLIQALFRIVEPS 998


>01_06_0468 - 29582506-29583147,29583313-29583600
          Length = 309

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 136 HGAQTGIVANTGPSKSRVRRIYH-RIGNPTH 47
           HG   G+V + GPS +R  R+ H R G+P H
Sbjct: 68  HGLDRGLVWHRGPSFTRKLRVKHARPGSPPH 98


>01_07_0166 + 41595729-41595735,41595914-41596863
          Length = 318

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 139 AHGAQTGIVANTGPSKSRVRRIYHRIG 59
           AHG   G+V N  PS+S V ++Y   G
Sbjct: 4   AHGVCYGVVGNNLPSRSEVVQLYKSKG 30


>01_01_0517 + 3803740-3806106,3806226-3806312,3806397-3807035,
            3807118-3807282,3807363-3807657,3807739-3807953,
            3808125-3808430,3808539-3808602,3808735-3808974,
            3809150-3809253
          Length = 1493

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 133  GAQTGIVANTGPSKSRVRRIYHRIGNPT 50
            G +TGIV  TG  KS + +   RI +PT
Sbjct: 1277 GMKTGIVGRTGSGKSTLIQALFRIIDPT 1304


>08_01_0572 +
           5090474-5090787,5090973-5091000,5092725-5092837,
           5092947-5093058
          Length = 188

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +2

Query: 302 RTYIS-RWVAHLGRRCLWAPVTT*H 373
           + Y++ RW  HLGRR L +PV   H
Sbjct: 83  KVYLAGRWKRHLGRRSLTSPVGRCH 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,507,641
Number of Sequences: 37544
Number of extensions: 176795
Number of successful extensions: 324
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)