Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30818
         (348 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    54   8e-09
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    29   0.21 
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   1.5  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   1.5  
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce...    24   5.9  
SPCC5E4.10c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    24   5.9  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      24   7.8  
SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces ...    24   7.8  
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom...    24   7.8  

>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 53.6 bits (123), Expect = 8e-09
 Identities = 27/49 (55%), Positives = 32/49 (65%)
 Frame = +2

Query: 2   LGRFKELQFFTGESMDCDGMVAMMEYRDFDGTQIPIMMFFKHGLEEEKF 148
           L  FK+  F+ GESMD D MV +M YR+ DG   P M+FFK GL  EKF
Sbjct: 122 LANFKDYDFYIGESMDPDAMVVLMNYRE-DGI-TPYMIFFKDGLVSEKF 168


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 29.1 bits (62), Expect = 0.21
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -1

Query: 189 ASLELLSYFLSNI*NFSSSRPCLKNIMIGICVPSKSLY 76
           AS ELL+       NFS+ R CL+N ++  CVP   +Y
Sbjct: 781 ASFELLNNLTEARKNFSNYRDCLENCVLP-CVPFLGVY 817


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 200  FCFFIYLSIMSASW-QELAFSSQG*TILYLKKYTAY 304
            +CF + L ++SA W  E+  S QG  +L  K    Y
Sbjct: 1395 WCFSVQLQLLSADWPNEIVESVQGRLVLGSKNEVLY 1430


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -2

Query: 104 VFAYHQSLYIPSWQPC-HHN 48
           V A+ Q L++P W PC  HN
Sbjct: 336 VVAFTQGLFLPRWLPCIKHN 355


>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 760

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 219 YQSCPHPGRNWLSHHKAEQ 275
           Y+ C H   ++LSH K EQ
Sbjct: 13  YEECQHKITDFLSHFKQEQ 31


>SPCC5E4.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 101

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 106 WYLRTIKVSIFHHGNHAITIHGLPSKELKFL 14
           WY++T K+SI    N+  + +  P  +  FL
Sbjct: 12  WYMKTDKISIDETSNNMSSKYRAPQDDPMFL 42


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 176 NSKLAP*YFCFFIYLSIMS 232
           +S + P +FCFF Y S+ S
Sbjct: 101 DSNVVP-FFCFFFYFSLFS 118


>SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 6   AGLR-NFSSLLGSPWIVMAWLP*WNIE 83
           AGL+ +F + +  P +V ++LP WN E
Sbjct: 139 AGLKPSFKAAMSLPEMVSSFLPAWNSE 165


>SPBC691.05c ||SPBP22H7.01c|membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 668

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 305 CMQYIFLNTKLFSLVMRKPVPARM 234
           C+ YI  +   F+ +++KPVP R+
Sbjct: 524 CVLYIRSSVYRFTKMVKKPVPCRV 547


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,388,927
Number of Sequences: 5004
Number of extensions: 25171
Number of successful extensions: 68
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)