Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30818
(348 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0628 - 25643006-25643123,25643314-25643471,25643559-256436... 49 1e-06
03_04_0125 - 17487746-17487847,17488025-17488555,17488834-174891... 29 1.3
09_04_0741 - 19852339-19852497,19853185-19853246,19853352-198534... 28 2.3
01_05_0078 + 17931998-17932062,17933320-17933416,17933506-179336... 27 3.1
12_02_0900 - 24153734-24153943,24154461-24155110,24155198-241553... 27 5.3
11_01_0056 + 427376-427408,427589-427694,427777-427823,427907-42... 27 5.3
03_01_0074 + 610948-611184,611745-611867,611983-612082,612167-61... 27 5.3
02_05_0172 + 26460884-26461084,26461168-26461391,26461726-264617... 26 9.3
>11_06_0628 -
25643006-25643123,25643314-25643471,25643559-25643687,
25644378-25644451,25644771-25644798
Length = 168
Score = 48.8 bits (111), Expect = 1e-06
Identities = 23/48 (47%), Positives = 30/48 (62%)
Frame = +2
Query: 2 LGRFKELQFFTGESMDCDGMVAMMEYRDFDGTQIPIMMFFKHGLEEEK 145
LG+ K+LQFF GESM DG + Y+ DG P ++F HGL+E K
Sbjct: 122 LGKLKDLQFFVGESMHDDGGLVFAYYK--DGATDPTFLYFSHGLKEVK 167
>03_04_0125 -
17487746-17487847,17488025-17488555,17488834-17489102,
17489161-17489257,17491060-17491161,17491235-17491367,
17491589-17491681,17491756-17491844,17493578-17493700,
17496908-17497004,17497440-17497639
Length = 611
Score = 28.7 bits (61), Expect = 1.3
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +3
Query: 171 SIIPNWRLDTFVFLFIYQSCPHPGRNWLSHHKAEQFCI*K 290
S+ NWR+ + V F+ C H W H E+ + K
Sbjct: 257 SLPQNWRIYSSVASFLQHVCDHKEEEWKRHILEEEIAVLK 296
>09_04_0741 -
19852339-19852497,19853185-19853246,19853352-19853415,
19853561-19853614,19853744-19853890,19854460-19854564,
19854651-19854794,19854987-19855093,19855613-19855712,
19855804-19855833,19856492-19856608,19856705-19856828,
19857143-19857189,19857272-19857400,19857777-19857852,
19858446-19858543,19858630-19858671,19858811-19859044
Length = 612
Score = 27.9 bits (59), Expect = 2.3
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -2
Query: 101 FAYHQSLYIPSWQPC-HHNPWTPQ*RTEVP 15
F YH +Y+ SW C H N ++ Q + +P
Sbjct: 264 FLYHGRMYVSSWHICFHSNVFSKQIKVMLP 293
>01_05_0078 +
17931998-17932062,17933320-17933416,17933506-17933601,
17933957-17933988,17935143-17935595,17935831-17935975,
17936058-17936159,17937798-17937890,17939448-17939489,
17940092-17940202,17940446-17940517,17940596-17940714,
17940981-17941044,17941133-17942782
Length = 1046
Score = 27.5 bits (58), Expect = 3.1
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -1
Query: 129 PCL-KNIMIGICVPSKSLYSIMATMPSQSMDSPV 31
PCL K+ GI P+K ++ TMPS S + +
Sbjct: 200 PCLLKDASTGITKPAKEQGKLLVTMPSSSTSTKI 233
>12_02_0900 -
24153734-24153943,24154461-24155110,24155198-24155334,
24156595-24157223
Length = 541
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 144 FSSSRPCLKNIMIGICVPSKSLYSI 70
F+ ++P +KN+ IGI VP S +I
Sbjct: 243 FTDTKPNMKNLFIGILVPKLSSRTI 267
>11_01_0056 +
427376-427408,427589-427694,427777-427823,427907-428065,
429018-429092,429379-429973,430529-430943,431105-431118,
431476-431591
Length = 519
Score = 26.6 bits (56), Expect = 5.3
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -1
Query: 123 LKNIMIGICVPSKSLYSIMATMPSQSMDSP 34
L N M+G +P+ L S+ +P Q++ P
Sbjct: 187 LPNSMVGFSLPNDGLRSVHRNLPDQALGPP 216
>03_01_0074 +
610948-611184,611745-611867,611983-612082,612167-612213,
612292-612450,613033-613132,613209-613300,613390-614532,
614949-615041,615408-615493,615746-615873,615965-616086,
616202-616270,616380-616518,616624-616686,616887-616930,
617339-617425
Length = 943
Score = 26.6 bits (56), Expect = 5.3
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -1
Query: 123 LKNIMIGICVPSKSLYSIMATMPSQSMDSP 34
L N M+G +P++ L S+ +P Q++ P
Sbjct: 332 LPNPMVGFSLPNERLRSVHRNLPDQALGPP 361
>02_05_0172 +
26460884-26461084,26461168-26461391,26461726-26461756,
26462247-26462834
Length = 347
Score = 25.8 bits (54), Expect = 9.3
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +2
Query: 20 LQFFTGESMDCDGMVAMMEYRDFDGTQIPIMMFFK 124
L+ E+ C+G + + + R FDG ++M F+
Sbjct: 305 LRLLQDEAQRCEGRLVLSQKRYFDGKPRSLLMHFE 339
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,537,049
Number of Sequences: 37544
Number of extensions: 145370
Number of successful extensions: 364
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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