Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30818
         (348 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-10|CAB02099.1|  181|Caenorhabditis elegans Hypothetical p...    48   1e-06
Z70270-9|CAI79144.1|  261|Caenorhabditis elegans Hypothetical pr...    28   2.1  
U23176-4|AAC46716.1|  632|Caenorhabditis elegans Fem-3 mrna bind...    27   3.7  
AC006656-6|AAF39879.1|  614|Caenorhabditis elegans Fem-3 mrna bi...    27   3.7  
AL132862-25|CAB60566.2|   60|Caenorhabditis elegans Hypothetical...    27   4.9  

>Z79754-10|CAB02099.1|  181|Caenorhabditis elegans Hypothetical
           protein F25H2.11 protein.
          Length = 181

 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
 Frame = +2

Query: 8   RFKELQFFTGESMDC---DGMVAMMEYRDFDGTQIPIMMFFKHGLEEEK 145
           RFK L FF GE       +G VA++EYRD DGT++P +M  K  + EEK
Sbjct: 132 RFKNLAFFIGERAAEGAENGQVAIIEYRDVDGTEVPTLMLVKEAIIEEK 180


>Z70270-9|CAI79144.1|  261|Caenorhabditis elegans Hypothetical
           protein C53D6.11 protein.
          Length = 261

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 205 FFYLFINHVRILAGTGFLITRLNNFVFKKIYCI 303
           F Y+F+  + +   T  L T LNNF  ++ Y I
Sbjct: 6   FIYIFLGLIELCVSTFILSTVLNNFRLREKYSI 38


>U23176-4|AAC46716.1|  632|Caenorhabditis elegans Fem-3 mrna binding
           factor protein 2 protein.
          Length = 632

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 141 RNSKC*IRNNSIIPNWRLDT 200
           RNS+   R+N+++P W LD+
Sbjct: 156 RNSRSFTRSNNVLPTWSLDS 175


>AC006656-6|AAF39879.1|  614|Caenorhabditis elegans Fem-3 mrna
           binding factor protein 1 protein.
          Length = 614

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 141 RNSKC*IRNNSIIPNWRLDT 200
           RNS+   R+N+++P W LD+
Sbjct: 154 RNSRSFTRSNNVLPTWSLDS 173


>AL132862-25|CAB60566.2|   60|Caenorhabditis elegans Hypothetical
           protein Y73F8A.32 protein.
          Length = 60

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +2

Query: 197 YFCFFIYLSIMSASWQELAFSSQ 265
           +FCF  +  + S+SW+E  F ++
Sbjct: 11  FFCFLYFPKVSSSSWEEDGFDAR 33


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,652,028
Number of Sequences: 27780
Number of extensions: 140496
Number of successful extensions: 323
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)