Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30817
(609 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces p... 30 0.23
SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces pom... 30 0.23
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 30 0.23
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 29 0.70
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa... 28 1.2
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha... 28 1.2
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi... 27 1.6
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 27 2.1
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 27 2.1
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p... 27 2.1
SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.8
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 26 5.0
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 26 5.0
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 25 6.5
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory... 25 8.7
SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|ch... 25 8.7
SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|c... 25 8.7
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p... 25 8.7
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces... 25 8.7
>SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 506
Score = 30.3 bits (65), Expect = 0.23
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +3
Query: 357 LKPAETDKKDPQDSIMSLMKNMYETGDDEMKRMISKAWYEGQQRKK 494
LK AE +KDP I+ L N++ G K W +Q +K
Sbjct: 248 LKEAEEFQKDPASKILLLFYNIFGVGASHAAEWYQKGWRTIEQVRK 293
>SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 30.3 bits (65), Expect = 0.23
Identities = 17/66 (25%), Positives = 37/66 (56%)
Frame = +3
Query: 279 AKSNPNTTWSHMTEIEKKFEDQRNNRLKPAETDKKDPQDSIMSLMKNMYETGDDEMKRMI 458
AK + +++ S T+ + K D +L E D+ + ++ +L +N+Y+ DD+ +R +
Sbjct: 284 AKDSNHSSASGNTKNKAKDWDSLA-KLADLEEDEPTGEAALANLFQNLYKNADDDTRRAM 342
Query: 459 SKAWYE 476
K++ E
Sbjct: 343 MKSYTE 348
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 30.3 bits (65), Expect = 0.23
Identities = 22/80 (27%), Positives = 42/80 (52%)
Frame = +1
Query: 16 VQKKYQVKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVYCKLTDKSMELHVDNLENKDYL 195
++ K + ++ +G+ S V+ +E + V T + + Y LTD S+E ENK L
Sbjct: 3443 LRNKCEPIISSFGFPISKSAVRTNIE-RCVQTSIESKYYKNLTDYSLENIYIIQENKSPL 3501
Query: 196 LVINKLLEPINVADSHWKQK 255
L+I+ + +++ S +K K
Sbjct: 3502 LIIDPSSQILDILPSLYKGK 3521
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 28.7 bits (61), Expect = 0.70
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 294 NTTWSHMTEIEKKFEDQRNNRLKPAETDKKDPQ 392
NT W M +E++ + R + LKP D+K+ +
Sbjct: 350 NTIWREMMAMERRTQAARLSGLKPVAADEKESE 382
>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 27.9 bits (59), Expect = 1.2
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +3
Query: 294 NTTWSHMTEIEKKFEDQR-NNRLKPAETDKKDPQDSIMSLMKNMYETGDDEMKRMISKAW 470
NT + + +K E Q N R AE D+K P D+I +L + + ++ +
Sbjct: 83 NTEYIVASGGRRKIEPQDINERPAKAENDEKVPSDAIEALETQLTQQKSEKHNSSVINFI 142
Query: 471 YEGQQRKKTD 500
YE +R +D
Sbjct: 143 YEKNERLWSD 152
>SPCC364.06 |nap1||nucleosome assembly protein Nap1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 393
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Frame = +3
Query: 288 NPNTTWSHMTEIE---KKFEDQRNNRLKPAETDKKDPQDSIMSLMKNMYETGDDEMKRMI 458
N NT + + ++ F + N P+E D++ + L++ Y+ G+D +++I
Sbjct: 268 NKNTKQTRVVKVSVPRDSFFNFFNPPTPPSEEDEESESPELDELLELDYQIGEDFKEKLI 327
Query: 459 SKA--WYEGQ 482
+A W+ G+
Sbjct: 328 PRAVEWFTGE 337
>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
Usp105|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 27.5 bits (58), Expect = 1.6
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 184 KDYLLVINKLLEPINVADSHWKQ 252
++YLL+ + P +V +SHWK+
Sbjct: 530 QEYLLIDRDVFGPFSVRESHWKK 552
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 336 EDQRNNRLKPAETDKKDPQDSIMSLMKNMYETGDDE 443
++++ N+ K A D KDP D + +KN+ +DE
Sbjct: 93 KEKKQNKSKEALADAKDPLDESSNGIKNLSLNKNDE 128
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -2
Query: 515 FIIHYISFLTLLSFIPSLGDHSLHFIITSF 426
F+IHY S T F DHS+ F+ F
Sbjct: 635 FVIHYRSLATAFLFADREPDHSVMFLSVQF 664
>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 591
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = -3
Query: 508 SIISVFLRCCPSYQALEIILFISSSPVSYIFFMRLIM 398
S+ ++L CCP IL+ +SP ++ F ++
Sbjct: 355 SLAILYLFCCPDLDTFTAILYNDNSPQPFVNFYSYLL 391
>SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 172
Score = 26.6 bits (56), Expect = 2.8
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = -3
Query: 607 FFFFXFFESF---**YTISLLLNRIQFRIYAEFSL*SIISVFLRCCPSYQALEIILFISS 437
F FF FFESF + + ++ F +F L S+ CC S+ ILF SS
Sbjct: 54 FLFFFFFESFLLPLSFAHLIKQRKLIFNKAIDFKLNSL------CC-SFTCYPSILFASS 106
Query: 436 SPVSYI 419
P+ +I
Sbjct: 107 LPIQFI 112
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 25.8 bits (54), Expect = 5.0
Identities = 14/60 (23%), Positives = 32/60 (53%)
Frame = +3
Query: 321 IEKKFEDQRNNRLKPAETDKKDPQDSIMSLMKNMYETGDDEMKRMISKAWYEGQQRKKTD 500
IE ++ +R +P ++ + ++S +++ E D+E+KR I+ + E Q+ + D
Sbjct: 269 IELSLKEMPQSR-EPPSYERPSEANVVISQDQHLTEDEDEELKRAIAISLEEAQKSSQKD 327
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 25.8 bits (54), Expect = 5.0
Identities = 23/80 (28%), Positives = 35/80 (43%)
Frame = +1
Query: 16 VQKKYQVKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVYCKLTDKSMELHVDNLENKDYL 195
+QK Y+ WD+SDK V ++E N L K K T S L L D
Sbjct: 2195 LQKWYEEWCGKQDWDESDKSVVCWIEEHN-DDLSKRTQELKSTYYSERL--SKLLRSDRK 2251
Query: 196 LVINKLLEPINVADSHWKQK 255
+I+ L + + D + K++
Sbjct: 2252 GMIDSLAQVLTELDENEKKE 2271
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 169 DNLENKDYLLVINKLL 216
DNLEN DY+L + LL
Sbjct: 569 DNLENDDYVLALRDLL 584
>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
factor |Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 210 VIGTYKCGRQSLETKTDKVVIFLAKSNPNTTWSHMT 317
++ T K S ETK D+ + + S P+ T SH T
Sbjct: 114 ILLTIKRATSSQETKRDRPLPNIRNSAPSATRSHST 149
>SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 492
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -3
Query: 196 ASNLYFPDCPHAAPLIYLSIYNIPVPLV 113
A YF DC HA + + YN V +V
Sbjct: 268 AEQTYFQDCMHAVTVDLMRKYNKEVAIV 295
>SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 329
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/37 (24%), Positives = 22/37 (59%)
Frame = +3
Query: 432 GDDEMKRMISKAWYEGQQRKKTDIMDYKLNSA*ILNC 542
GD+ +K+ + K + E Q++K ++ ++ + +NC
Sbjct: 206 GDELLKKKVQKEFLENIQKRKEEVSNFLHSIKEDINC 242
>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 464
Score = 25.0 bits (52), Expect = 8.7
Identities = 8/29 (27%), Positives = 19/29 (65%)
Frame = +1
Query: 115 PKEQVYCKLTDKSMELHVDNLENKDYLLV 201
PK+ +C+L + + H++ L++K + L+
Sbjct: 331 PKQSDFCQLRNFLLYTHIEGLKHKTHKLI 359
>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 403
Score = 25.0 bits (52), Expect = 8.7
Identities = 15/67 (22%), Positives = 30/67 (44%)
Frame = +3
Query: 264 VVIFLAKSNPNTTWSHMTEIEKKFEDQRNNRLKPAETDKKDPQDSIMSLMKNMYETGDDE 443
+V+ L N +WS T + ++ Q+N + T K MS K++ + +
Sbjct: 272 IVVILFAFLSNFSWSDSTSVNTRYSFQQNYKYTVPRTTAKHNIPYYMS-QKDLDKLSSRD 330
Query: 444 MKRMISK 464
++R+ K
Sbjct: 331 IRRLNEK 337
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,434,587
Number of Sequences: 5004
Number of extensions: 52081
Number of successful extensions: 191
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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