Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30814
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo...    27   3.1  
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy...    26   5.4  
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|...    26   7.2  
SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces p...    25   9.5  
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ...    25   9.5  

>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 572

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 710 KNSAAFINQRCQEWGIFKFKLNTSMLWFI 796
           +NS+ FI    ++W  FK  L TS+ WF+
Sbjct: 330 ENSSGFITY-FRQWRHFKHLLGTSVCWFL 357


>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 713 NSAAFINQRCQEWGIFKFKLNTSMLWFI 796
           N + FI Q  ++W  FK  L TS+ WF+
Sbjct: 332 NRSGFI-QYFRQWHHFKHLLGTSVCWFL 358


>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 383 LYNRVAFLQHRYIIPRPVSSH 445
           LY  +  L H++I+P P SSH
Sbjct: 178 LYAPLHKLHHKWIVPTPYSSH 198


>SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 232

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 260 RLESVATRILSGFACNAGRDCVSCQYWKEALC 165
           +L S     LSG   +  R+C+S Q   EALC
Sbjct: 99  KLVSYVQGDLSGLIFDEARNCLSQQLTNEALC 130


>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 314

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +2

Query: 275 YSLSINLSINALTICQGRLWTPCLHG-SIKIF 367
           YSL    +INAL     R W     G SI+IF
Sbjct: 228 YSLEAKANINALVFSPNRYWLCAATGSSIRIF 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,186,201
Number of Sequences: 5004
Number of extensions: 64737
Number of successful extensions: 132
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)