Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30814
         (802 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    23   2.5  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   3.3  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   7.6  

>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 444 TETCLVWYFVF*FFNKIVMYK 506
           T   L+ YF+F +FN +V ++
Sbjct: 14  TSFILINYFIFLYFNSLVRFR 34


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
          protein.
          Length = 402

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +2

Query: 5  NQSRIT-GQEEEED*VFSAVSVLLSGKL 85
          +Q+ +T G+E++ +  FS +SVLL G L
Sbjct: 4  SQNNLTDGKEDQPENTFSLLSVLLVGFL 31


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +2

Query: 731 NQRCQEWGIFKFKLNTSMLWFISI 802
           N   Q+WG     L+   LW  +I
Sbjct: 472 NAEDQDWGFVAMVLDRLFLWIFTI 495


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,122
Number of Sequences: 438
Number of extensions: 4319
Number of successful extensions: 27
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)