Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30812
         (502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch...    92   5e-20
SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosac...    89   3e-19
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    29   0.39 
SPAC1250.04c |atl1||alkyltransferase-like protein Atl1|Schizosac...    28   0.69 
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom...    27   1.2  
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    27   1.6  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    26   2.8  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    26   3.7  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    25   4.8  
SPBC336.10c |tif512||translation initiation factor|Schizosacchar...    25   6.4  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    25   6.4  
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos...    25   6.4  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    25   8.4  
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    25   8.4  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    25   8.4  

>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 127

 Score = 91.9 bits (218), Expect = 5e-20
 Identities = 39/60 (65%), Positives = 49/60 (81%)
 Frame = +1

Query: 76  IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 255
           I+KKRTK F RHQSDR+ ++  +WRKPRGID+ VRRRF+G   MP IGYG+NKKTR+ +P
Sbjct: 6   IIKKRTKPFKRHQSDRFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMP 65



 Score = 74.9 bits (176), Expect = 6e-15
 Identities = 34/63 (53%), Positives = 48/63 (76%)
 Frame = +3

Query: 252 PNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLR 431
           PNG +  LV NV ++E+L+M N+ Y AEIA  VS++KR  IVE+A+ L ++VTNA A++R
Sbjct: 65  PNGLKAFLVRNVSDVELLLMHNKTYAAEIAGNVSARKRVEIVEKARALGVKVTNAGAKVR 124

Query: 432 SQE 440
           SQE
Sbjct: 125 SQE 127


>SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score = 89.4 bits (212), Expect = 3e-19
 Identities = 39/60 (65%), Positives = 48/60 (80%)
 Frame = +1

Query: 76  IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 255
           IVKKRTK F RHQSD + ++  +WRKPRGID+ VRRRF+G   MP IGYG+NKKTR+ +P
Sbjct: 6   IVKKRTKPFKRHQSDLFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMP 65



 Score = 75.4 bits (177), Expect = 5e-15
 Identities = 34/63 (53%), Positives = 48/63 (76%)
 Frame = +3

Query: 252 PNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLR 431
           PNG +  LV NV ++E+L+M N+ Y AEIA  VS++KR  IVE+A+ L ++VTNA A++R
Sbjct: 65  PNGLKAFLVRNVSDVELLLMHNKTYAAEIASNVSARKRVEIVEKARALGVKVTNAGAKVR 124

Query: 432 SQE 440
           SQE
Sbjct: 125 SQE 127


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 29.1 bits (62), Expect = 0.39
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 443 VLLGPEASGRIRHSDAELLGSFHDQLPLLRRDTVSDLCAVL 321
           VL   +   R+ HSD + + +F DQ   +RR  +  LC +L
Sbjct: 139 VLKNSKQISRLIHSDVQNISNFFDQNFGIRRSNIYQLCLLL 179


>SPAC1250.04c |atl1||alkyltransferase-like protein
           Atl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 28.3 bits (60), Expect = 0.69
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +3

Query: 3   HRVVHCR--VS*RNIQDGYKTCLQADNRQKEDEEIYQASIG 119
           HRV++ R  +S R+I  G +   Q D  ++E  EIYQ S+G
Sbjct: 57  HRVINSRGTISKRDISAGEQR--QKDRLEEEGVEIYQTSLG 95


>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 558

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
 Frame = -2

Query: 150 TPIPLKFV--IAIRLMPDKSLRP 88
           TP+P+KFV  IA+  MP  +LRP
Sbjct: 427 TPVPIKFVADIAMHSMPRVALRP 449


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 21/69 (30%), Positives = 31/69 (44%)
 Frame = +1

Query: 67  RPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRH 246
           R T VK+R K  I+  S+    +     KP G   R R+  K  Y +P  G  +  +   
Sbjct: 540 RETKVKRRRKARIQETSEESTVVNEPNEKPDGRSRRERK--KVNYALP--GLRTKLRRNF 595

Query: 247 MLPMDSVRS 273
            LP D V++
Sbjct: 596 DLPSDHVKA 604


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 11/66 (16%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +3

Query: 255 NGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKL--IVERAQQLSIRVTNAAARL 428
           N  R+  +HN++ ++ L+ Q  ++C +    V     ++  ++  A ++ + + ++A   
Sbjct: 595 NALREWFLHNIESIDQLIAQAHEFCIDSGSRVQELPLEVLDVIMEANEVILAIQSSALAY 654

Query: 429 RSQENE 446
           R +  +
Sbjct: 655 RRESQK 660


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = +3

Query: 216  WLRFQQEDPSYAPNGFRKVLVHNVKELEI-LMMQNRKYC-AEIAHGVS-SKKRKLIV 377
            WLRF  E P      F+  +VH + E E    ++  + C  E  +G   S  RK+++
Sbjct: 1239 WLRFVDESPQTLFQTFQNPVVHYLDEAEASSSLKEEQLCRQEFCYGKDYSNVRKMLL 1295


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = +2

Query: 119 IAMTNLRGIGVNLEVLTTESAGGSRVNT*CPTLVTVPTRRPVICSQWIP 265
           IA+ N   +    E+      GG  + +       +PT+ PV C+ W P
Sbjct: 172 IAVYNSSPVTEITEIKQVTFTGGEDIKS--DFFKVIPTKHPVTCADWRP 218


>SPBC336.10c |tif512||translation initiation
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +3

Query: 36  NIQDGYKTCLQADNRQKEDEEIYQASIGS 122
           NI DGY   +  D   K+D  + +  +G+
Sbjct: 95  NIDDGYLNLMTTDGTTKDDVRLPEGELGN 123


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 100 FIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 225
           F  H  D YD+L  NW++   ++    +RFK      NI  G
Sbjct: 822 FCVHTRDVYDELVPNWKETYQMEITNVKRFKLIIYQRNIHTG 863


>SPAC26H5.10c |tif51||translation initiation factor
           eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +3

Query: 36  NIQDGYKTCLQADNRQKEDEEIYQASIGS 122
           NI DGY   +  D   K+D  + +  +G+
Sbjct: 95  NIDDGYLNLMTTDGTTKDDVRLPEGELGN 123


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
            homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = +2

Query: 8    RGSLSR--FLKKHTRWL*DLFTGRQSSKRGRRDL 103
            RGS SR  F KKH RW   L +  ++  R    L
Sbjct: 931  RGSSSRGAFYKKHNRWTEGLISAAKAVARATTTL 964


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +2

Query: 308 DAKQEVLRRDRSRCLFEEAEADRGKSPAAQHQSDECGRSPPVPG 439
           D K+    R+      +E  A   K P   + S  C R+PP  G
Sbjct: 125 DKKRRAAERENKNSSVKETAAPI-KQPKNANSSSTCTRTPPTSG 167


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +3

Query: 327 CAEIAHGVSSKKRKLIVERAQQLSIRVTN 413
           C  + HGV   + K ++ER    +   +N
Sbjct: 135 CQPVRHGVVDSETKFVIERKDSFTFLASN 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,898,712
Number of Sequences: 5004
Number of extensions: 37202
Number of successful extensions: 119
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)