Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30808
         (769 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    24   1.4  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   4.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   7.2  

>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 55  RRNQTSRVVGPMPLYGNGAIWTLRPMIDSCPVTSCSP 165
           RR ++ R+ G M +    A+W L   I S P+  C P
Sbjct: 148 RRRRSKRLAGLMIV----AVWVLAGAITSPPLLGCFP 180


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 317 H*NRRSAPPFPTRRVRGTCPTGESD 243
           H  RR+ PP P R  +     GES+
Sbjct: 246 HYERRATPPQPDRTSKDQGTIGESE 270


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -1

Query: 328 FSVFIEIVAALLHFQLVEFEALAPLAR 248
           FS+ + +V   +HF+  +   +AP  R
Sbjct: 316 FSICVTVVVLNVHFRSPQTHVMAPWVR 342


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,372
Number of Sequences: 438
Number of extensions: 3772
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)