Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30807
         (798 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    28   1.3  
SPAC17C9.13c |cut8||tethering factor for nuclear proteasome Cut8...    27   2.4  
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe...    27   4.1  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    25   9.5  
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    25   9.5  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    25   9.5  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    25   9.5  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    25   9.5  

>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +2

Query: 269 GRQIRSPADHAVRSGSGKTLRAGPAHRWDAP 361
           G QIRS +  A  SG+G TL  G A R+  P
Sbjct: 202 GNQIRSSSSKAKISGTGITLNLGAASRFLMP 232


>SPAC17C9.13c |cut8||tethering factor for nuclear proteasome
           Cut8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 515 VKTLAYDTLDANKRFFDNDISKVPRQALTVG 607
           ++TL+Y  +   K  FD DISK  RQ L VG
Sbjct: 1   METLSYSQIKKRKADFDEDISKRARQ-LPVG 30


>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +2

Query: 260 CRLGRQIRSPADHAVRSGSGKTLRAGPAHRWDAPRHVQTVD 382
           C   R  R PA+ +  S        G  H WD   H++++D
Sbjct: 185 CNRVRSARRPANSSKESLLASFHETGKVHIWDIAPHLRSLD 225


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -3

Query: 439 SMLKVVTYLKDNFPSLWNSINRLYMPRGVPPV 344
           S++++   LK ++  L  + +  + PRG PPV
Sbjct: 416 SLMQMQQSLKSDYEGLGRTFDPRFAPRGSPPV 447


>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = -2

Query: 413 ER*LPFLVELYQPFVHAEGRPTGGQAQHEVSSRTRSELRDPLE-NESGGPVG 261
           E+ L  +V+L Q  +HA   PT G+   +  +     LRD    N   GP G
Sbjct: 162 EKRLSLIVDLDQTIIHATVDPTVGEWMSDPGNVNYDVLRDVRSFNLQEGPSG 213


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -2

Query: 254 LASSRIIRRIVRDYFHT-LAVTISYY 180
           +A  RI RRI +DY H  L+  I Y+
Sbjct: 166 IAGERIARRIRQDYLHAILSQNIGYF 191


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -3

Query: 688 HSLGKRQGLVHSCYEDHDLFSVHNSSDSNGERLS-GHL 578
           +SL  + G  HS   ++      NSSD N +R   GHL
Sbjct: 697 NSLSNKPGFAHSESRNYHTHDEDNSSDDNHKREDRGHL 734


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 282 RIWRPSRQRSGIFENYKTHSSGLLSHVSGDNILLRT 175
           +I  PS  +S   E    H++  ++HV G+N  L+T
Sbjct: 55  QIKSPSDYKSSAHEQRVNHTTDSMAHVPGNNSPLQT 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,428,309
Number of Sequences: 5004
Number of extensions: 75249
Number of successful extensions: 240
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)