Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30807
(798 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0584 - 30135768-30135790,30136104-30136866 31 1.1
12_02_1084 - 25928373-25928426,25928551-25928652,25928913-259290... 30 2.5
09_02_0113 + 4408171-4409415,4409902-4409907 29 3.2
09_06_0348 + 22452219-22452360,22452791-22452912,22453342-224534... 29 4.3
09_06_0039 - 20423829-20424308,20424664-20424729,20425969-204261... 29 4.3
06_03_0940 + 26145746-26145879,26146740-26146821,26147349-261474... 29 4.3
06_03_0121 + 16864735-16865619,16865706-16866026 29 4.3
12_01_0631 - 5234452-5234468,5234536-5234839,5234926-5235810 29 5.7
08_01_0831 + 8086470-8087354,8087441-8087730,8096373-8096412,809... 29 5.7
06_03_0573 + 22407489-22408373,22408460-22408795 29 5.7
03_03_0153 - 14910420-14910769,14910946-14911008,14911084-149113... 29 5.7
02_01_0016 + 110796-110979,111252-111768,111847-112213 29 5.7
01_01_0677 + 5201089-5201177,5201325-5202183,5202321-5202794 29 5.7
07_01_1077 - 9687394-9687515,9696615-9696733,9696815-9697104,969... 28 7.5
07_01_0697 + 5265079-5266281 28 7.5
06_03_1455 + 30264023-30264174,30265930-30266070,30266328-302664... 28 7.5
04_04_1481 - 33894175-33894537,33894618-33894739,33894841-33895225 28 7.5
04_01_0291 + 3848091-3848975,3849062-3849351,3858003-3858339 28 7.5
08_02_1479 + 27390852-27391059,27392017-27392138,27392227-273923... 28 9.9
03_01_0379 + 2946605-2946684,2946798-2946944,2947420-2947488,294... 28 9.9
>02_05_0584 - 30135768-30135790,30136104-30136866
Length = 261
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = -1
Query: 696 PSSTALASAKDLCTPVMRIMTS---LASITVPTPTVSACRG 583
PSS A K+ TP+M +M L + VPTP + C G
Sbjct: 161 PSSPAQPQPKECMTPLMSVMPCADYLTNTAVPTPPATCCDG 201
>12_02_1084 -
25928373-25928426,25928551-25928652,25928913-25929039,
25929292-25930730,25931430-25931447
Length = 579
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = +2
Query: 419 CDHFQHGRVCGY--RSGR--SHRVQRTGLLAGVSTRVKTLAYDTLDANKRFFDNDISKV 583
CD++ VCG+ R G Q GLLA K L+ LDA ++ + +S++
Sbjct: 205 CDNYDDAEVCGFEDRIGSLLHENEQLQGLLADKKMVAKHLSLQVLDAERKMAQHSLSEL 263
>09_02_0113 + 4408171-4409415,4409902-4409907
Length = 416
Score = 29.5 bits (63), Expect = 3.2
Identities = 24/64 (37%), Positives = 29/64 (45%)
Frame = -1
Query: 405 TSLPCGTLSTVCTCRGASHRWAGPARSVFPDPERTA*SAGERIWRPSRQRSGIFENYKTH 226
TSLP GTL + AS R R++ P P R A G+R WR R G + H
Sbjct: 137 TSLPSGTLPRILVLDPASRR-----RALLPQPPRDA-LPGDR-WRGRRHIVGAAVLSRAH 189
Query: 225 SSGL 214
S L
Sbjct: 190 PSRL 193
>09_06_0348 +
22452219-22452360,22452791-22452912,22453342-22453436,
22453691-22453844,22453952-22454014,22454329-22454478,
22454650-22454982,22455086-22455820
Length = 597
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +2
Query: 431 QHGRVCGYRSGRSHRVQRTGLLAGVSTRVKTLAYD--TLDANKRFFDNDISK 580
Q+ +CG R R+H + +LAGV +K L + ++ +F D I K
Sbjct: 79 QYKNLCGSRKVRAHYLSHDDVLAGVVNLIKKLKIKRIIIGSSNKFMDEIILK 130
>09_06_0039 -
20423829-20424308,20424664-20424729,20425969-20426104,
20426222-20426415
Length = 291
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 447 VGIGPDGHIAFNEPGSSLVSRRE 515
+G+GPDGHIA PG LV+ +
Sbjct: 185 LGMGPDGHIASLFPGHPLVNENK 207
>06_03_0940 +
26145746-26145879,26146740-26146821,26147349-26147427,
26147527-26147624,26148392-26148479,26148589-26148686,
26148881-26148982,26149237-26149281,26150535-26150574,
26150988-26151074,26151254-26151330,26151746-26151808,
26152650-26152766,26152905-26153116,26153690-26153785,
26153869-26153935,26154028-26154081
Length = 512
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -1
Query: 717 TVHMWFTPSSTALASAKDLCTPVMRIMTSLASITVPTPTVSACRGTLLMS 568
TV +W SST + D T +R++ +L + + P T+ R LL +
Sbjct: 455 TVKLWDVASSTKVLKTDDTSTNRLRMLKTLRTKSTPVYTLRFSRRNLLFA 504
>06_03_0121 + 16864735-16865619,16865706-16866026
Length = 401
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 275 QIRSPADHAVRSGSGKTLRAGPAHRWDAP 361
Q RSP H V+ G G T+R+ P + P
Sbjct: 308 QRRSPRQHTVQGGGGPTIRSDPQPQTSKP 336
>12_01_0631 - 5234452-5234468,5234536-5234839,5234926-5235810
Length = 401
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 275 QIRSPADHAVRSGSGKTLRAGPAHRWDAP 361
Q RSP H V+ G G T+R+ P + P
Sbjct: 308 QRRSPRQHTVQGGGGPTIRSDPQPQTSNP 336
>08_01_0831 +
8086470-8087354,8087441-8087730,8096373-8096412,
8096878-8096957,8099643-8099733,8099989-8100052,
8100553-8100818
Length = 571
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 275 QIRSPADHAVRSGSGKTLRAGPAHRWDAP 361
Q RSP H V+ G G T+R+ P + P
Sbjct: 308 QRRSPRQHTVQGGGGPTIRSDPQPQTSNP 336
>06_03_0573 + 22407489-22408373,22408460-22408795
Length = 406
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 275 QIRSPADHAVRSGSGKTLRAGPAHRWDAP 361
Q RSP H V+ G G T+R+ P + P
Sbjct: 308 QRRSPRQHTVQGGGGPTIRSDPQPQTSNP 336
>03_03_0153 -
14910420-14910769,14910946-14911008,14911084-14911339,
14911432-14911522,14911798-14912096,14912177-14912295,
14922536-14922594,14922676-14922965,14923052-14923567,
14923634-14923936
Length = 781
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 275 QIRSPADHAVRSGSGKTLRAGPAHRWDAP 361
Q RSP H V+ G G T+R+ P + P
Sbjct: 286 QRRSPRQHTVQGGGGPTIRSDPQPQTSNP 314
>02_01_0016 + 110796-110979,111252-111768,111847-112213
Length = 355
Score = 28.7 bits (61), Expect = 5.7
Identities = 23/62 (37%), Positives = 29/62 (46%)
Frame = -3
Query: 502 TSEEPGSLNAM*PSGPIPTYSSMLKVVTYLKDNFPSLWNSINRLYMPRGVPPVGRPSTKC 323
TS P +L A+ PS PIPT V+ P LW PR +PP+ RP+
Sbjct: 157 TSPSPPAL-ALAPS-PIPTPIIAPPPVSSPAPPLPPLWRR-----RPRRLPPIWRPTPPS 209
Query: 322 LP 317
LP
Sbjct: 210 LP 211
>01_01_0677 + 5201089-5201177,5201325-5202183,5202321-5202794
Length = 473
Score = 28.7 bits (61), Expect = 5.7
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = -2
Query: 365 AEGRPTGGQAQHEVSSRTRSE-LRDP-LENESGGPVGNDLASSRIIRRIVRDYFHTLAVT 192
AE P+G Q QH +S R R E L D L ++ P G+ + I+ R R+Y +L
Sbjct: 278 AEAPPSGNQLQHMISERKRREKLNDSFLALKAVLPPGSKKDKTSILIR-AREYVKSLESK 336
Query: 191 IS 186
+S
Sbjct: 337 LS 338
>07_01_1077 -
9687394-9687515,9696615-9696733,9696815-9697104,
9697191-9698075
Length = 471
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 275 QIRSPADHAVRSGSGKTLRAGP 340
Q RSP H V+ G G T+R+ P
Sbjct: 308 QRRSPRQHTVQGGGGPTIRSDP 329
>07_01_0697 + 5265079-5266281
Length = 400
Score = 28.3 bits (60), Expect = 7.5
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +1
Query: 604 WSRNCYGR*RGHDPHNRSAQVLGACQGCG 690
W+R C G R HDP + + + + CG
Sbjct: 352 WARGCEGAVRLHDPRTGACEEVAQVEKCG 380
>06_03_1455 +
30264023-30264174,30265930-30266070,30266328-30266430,
30266510-30266659,30267184-30267229,30267383-30267738
Length = 315
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = -2
Query: 377 PFVHAEGRPTGGQAQHEVSSRTRSELRDPLENESGGPVGNDLASSRIIRRIVRDYF 210
P ++ R + + SR+RS R+P G + SSR+ R ++DYF
Sbjct: 72 PAARSQSRSPVPDPRSQARSRSRSREREPDAVNHGNTLYVTGLSSRVTERELKDYF 127
>04_04_1481 - 33894175-33894537,33894618-33894739,33894841-33895225
Length = 289
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/37 (29%), Positives = 24/37 (64%)
Frame = +3
Query: 681 RLWRKA*TTCGRCRPSSNILKRFSCVTRRHTRVEGQN 791
++ R+ +CG P+S ++R + + R++ R+EG+N
Sbjct: 44 KILRELYYSCGIRSPNSEQIQRIAAMLRQYGRIEGKN 80
>04_01_0291 + 3848091-3848975,3849062-3849351,3858003-3858339
Length = 503
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 275 QIRSPADHAVRSGSGKTLRAGP 340
Q RSP H V+ G G T+R+ P
Sbjct: 308 QRRSPRQHTVQGGGGPTIRSDP 329
>08_02_1479 +
27390852-27391059,27392017-27392138,27392227-27392350,
27392641-27392702,27392778-27392859,27393338-27393410,
27397092-27397227,27397337-27397386,27397542-27397590,
27398352-27398831
Length = 461
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +3
Query: 396 EGKLSFKYVTTF-NMD-EYVGIGPDGHIAFNEPGSSLVS 506
+G ++ VT F +D +G+GPDGH+A PG +V+
Sbjct: 336 DGVVAISEVTGFPKLDLMLLGMGPDGHVASLFPGHPVVN 374
>03_01_0379 +
2946605-2946684,2946798-2946944,2947420-2947488,
2947608-2947773,2947889-2948117,2948206-2948645,
2949155-2949702,2949739-2949760
Length = 566
Score = 27.9 bits (59), Expect = 9.9
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = -2
Query: 419 IFER*LPFLVELYQPFVHAEGRPTGGQAQHEVSSRTRSELRDPLENESGGPVGNDLASSR 240
++ER L F +P + G HE+ R+ L + LENE P G SS+
Sbjct: 73 LYERLLAFSASTGEPAAKLSLKMQGKSGPHEIRCVKRNFLLETLENEL--PEGTIRFSSK 130
Query: 239 II 234
I+
Sbjct: 131 IV 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,646,840
Number of Sequences: 37544
Number of extensions: 573170
Number of successful extensions: 1969
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1967
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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