Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30807
         (798 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81113-3|CAB03280.1|  267|Caenorhabditis elegans Hypothetical pr...   116   1e-26
U39655-2|AAY86240.1|  152|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>Z81113-3|CAB03280.1|  267|Caenorhabditis elegans Hypothetical
           protein T03F6.3 protein.
          Length = 267

 Score =  116 bits (280), Expect = 1e-26
 Identities = 57/85 (67%), Positives = 67/85 (78%)
 Frame = +2

Query: 509 TRVKTLAYDTLDANKRFFDNDISKVPRQALTVGVGTVMDAKEVMILITGVHKSLALAKAV 688
           TR+KTL  DT+ AN RFF  DI+KVP QALTVGV TVMDA+EVMILITG HK+LAL +A+
Sbjct: 156 TRIKTLNEDTIQANARFFGGDITKVPTQALTVGVQTVMDAREVMILITGSHKALALHQAI 215

Query: 689 EEGVNHMWTVSAFQQHPQALFVCDE 763
           E G++HM TVSA Q H  A F+ DE
Sbjct: 216 ECGISHMCTVSAMQMHRCATFIADE 240



 Score = 58.0 bits (134), Expect = 7e-09
 Identities = 30/69 (43%), Positives = 43/69 (62%)
 Frame = +3

Query: 258 VADWAARFVLQRITQFAPGPGRHFVXXXXXXXXXXXMYKRLIEFHKEGKLSFKYVTTFNM 437
           VA++AAR+V+ +I + A   G++ V           MYK+LIEF+  G +SF+ V TFNM
Sbjct: 12  VAEFAARYVVTKINE-ATENGKYLVLGLPTGSTPLGMYKKLIEFYNAGVISFEKVKTFNM 70

Query: 438 DEYVGIGPD 464
           DEYV +  D
Sbjct: 71  DEYVDLPRD 79



 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 19/20 (95%), Positives = 19/20 (95%)
 Frame = +3

Query: 450 GIGPDGHIAFNEPGSSLVSR 509
           GIGPDGHIAFNEPGSSL SR
Sbjct: 136 GIGPDGHIAFNEPGSSLASR 155


>U39655-2|AAY86240.1|  152|Caenorhabditis elegans Hypothetical
           protein C46F4.3 protein.
          Length = 152

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = -3

Query: 445 YSSMLKVVTYLKDNFPSLWNSINRLYMPRGVPPVGRPSTKCLPG 314
           Y S +K    L D+ P    +I     P G   V RPSTKC+ G
Sbjct: 68  YDSKVKESESLHDDKPENLPAIGLAGHPCGQGGVCRPSTKCIEG 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,538,247
Number of Sequences: 27780
Number of extensions: 460324
Number of successful extensions: 1401
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1401
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)