Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30800
(322 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha... 29 0.13
SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 29 0.17
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 26 1.2
SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5 |Schi... 25 2.8
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 25 2.8
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 25 3.8
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 25 3.8
SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces pomb... 24 5.0
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch... 24 5.0
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 6.6
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ... 24 6.6
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 24 6.6
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 24 6.6
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch... 24 6.6
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa... 24 6.6
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo... 23 8.7
>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 29.5 bits (63), Expect = 0.13
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = +1
Query: 7 SENVWQVHLNSKQHRENIENAKKLKELTXNFTVVNKVKHKSSSPPKDAPPE 159
S+N + H NSK+H++N+ K +E+ + K +S+ P+DAP E
Sbjct: 281 SQNQLENHENSKKHKKNLR--KMNQEIKKHAKEAQK-NAESNKQPEDAPSE 328
>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 127
Score = 29.1 bits (62), Expect = 0.17
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = -1
Query: 217 WVLLSLARCLHFLIFLLSFFREVHLLEDWNS 125
W+L+ L ++ L+++ SF +++ LL W +
Sbjct: 91 WILIYLKGSINSLLYMASFTKQISLLRGWRT 121
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 26.2 bits (55), Expect = 1.2
Identities = 19/60 (31%), Positives = 26/60 (43%)
Frame = +1
Query: 70 KKLKELTXNFTVVNKVKHKSSSPPKDAPPEKKIKGILKNVGTVPVITKPKNDVPSVVEFH 249
KK KE + K KS S K+ +KKIK K T V + + P+ + FH
Sbjct: 198 KKKKEHKKKDKESSSKKRKSGSSDKEEKKKKKIKLKDKPESTSSVEKVKEGNRPASIHFH 257
>SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 173
Score = 25.0 bits (52), Expect = 2.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 255 LIVKFYHTWDIIFGFCYHWHGAYIF 181
LIV ++ + I+FGF W G ++F
Sbjct: 131 LIVMSFNGYAILFGFVGAWIGFFLF 155
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 25.0 bits (52), Expect = 2.8
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 28 HLNSKQHRENIENAKKLKELTXNFTVVNKVKHKS 129
HL+S + +E IENA K K+ +F K++ KS
Sbjct: 512 HLSSTKIQEMIENADKFKQQDKDF--AKKLEAKS 543
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 24.6 bits (51), Expect = 3.8
Identities = 11/44 (25%), Positives = 19/44 (43%)
Frame = +1
Query: 121 HKSSSPPKDAPPEKKIKGILKNVGTVPVITKPKNDVPSVVEFHN 252
H +SP PP G++ ++ +P ++ P S HN
Sbjct: 430 HGQTSPLSPIPPVHTTHGLVSDIRPLPSVSSPIMRADSTPISHN 473
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 24.6 bits (51), Expect = 3.8
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = +1
Query: 7 SENVWQVHLNSKQHRENIENAKK 75
SE + H+ SK+HR+N+ ++
Sbjct: 81 SEGAYSSHMASKKHRDNLSKFQR 103
>SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 436
Score = 24.2 bits (50), Expect = 5.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 214 VLLSLARCLHFLIFLLSFFREVH 146
+ +S C FL+FL FF +VH
Sbjct: 2 ISISFLNCF-FLVFLFLFFSDVH 23
>SPBC9B6.11c |||CCR4/nocturin family
endoribonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 502
Score = 24.2 bits (50), Expect = 5.0
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +1
Query: 103 VVNKVKHKSSSPPKDAPPEKKIKGILKNVGTVP 201
+ K K +PP +APPE I + + ++P
Sbjct: 75 MAKKAARKPIAPPSNAPPEFNTDFIKREMLSIP 107
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 23.8 bits (49), Expect = 6.6
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = -1
Query: 307 SLTFSVXTTGLSGXLLISHCEILPHLGHHFWVL-LSLARCLHFLIFLLSFF 158
SL+ + LS +S P+ H F LSL RCL F L FF
Sbjct: 76 SLSINPKKLSLSFSFPLSQKRPFPNFLHPFTGSELSLFRCLLLFFFFLLFF 126
>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
Cho2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 905
Score = 23.8 bits (49), Expect = 6.6
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -2
Query: 162 FFGRCIFWRTGTLVFNF 112
F G +FW TGT F +
Sbjct: 775 FSGDLLFWETGTFEFRY 791
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 23.8 bits (49), Expect = 6.6
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +1
Query: 94 NFTVVNKVKHKSSSPPKDAPPEKKIKGILKNVGTVPVITKPKNDVPS 234
N T + H+ S +PP + +GI N P I++P+ S
Sbjct: 105 NLTRNSSFNHQHYSTTLRSPPSMRGRGIDVNSSHYPHISRPRTSSDS 151
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 23.8 bits (49), Expect = 6.6
Identities = 11/38 (28%), Positives = 16/38 (42%)
Frame = +1
Query: 103 VVNKVKHKSSSPPKDAPPEKKIKGILKNVGTVPVITKP 216
V N + +S PPKD PP + + P+ P
Sbjct: 975 VSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLARVP 1012
>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 701
Score = 23.8 bits (49), Expect = 6.6
Identities = 15/57 (26%), Positives = 23/57 (40%)
Frame = +1
Query: 19 WQVHLNSKQHRENIENAKKLKELTXNFTVVNKVKHKSSSPPKDAPPEKKIKGILKNV 189
W ++ I+N +KLK +F V + S EKK K +L+ V
Sbjct: 584 WNFRRQRERQEIIIQNVEKLKSYLNSFKVQAECSEISKILSFSQETEKKYKFLLQTV 640
>SPBC27B12.12c |||CorA family magnesium ion transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 23.8 bits (49), Expect = 6.6
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +3
Query: 153 SRKKDKRNIKKCRHRASDNKTQK*CPKCGRIS 248
+RK ++ I + ++D T CP CG S
Sbjct: 115 NRKASRKKIPATQSSSADMDTLHVCPTCGSCS 146
>SPAC637.12c |mst1||histone acetyltransferase
Mst1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 23.4 bits (48), Expect = 8.7
Identities = 13/39 (33%), Positives = 16/39 (41%)
Frame = +1
Query: 118 KHKSSSPPKDAPPEKKIKGILKNVGTVPVITKPKNDVPS 234
K KSS PK + I K + P KP+ PS
Sbjct: 92 KGKSSKRPKAVDRRRSITAPSKTEPSTPSTEKPEPSTPS 130
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.310 0.128 0.363
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,119,494
Number of Sequences: 5004
Number of extensions: 20886
Number of successful extensions: 69
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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