Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30800
         (322 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   0.39 
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   1.2  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    21   2.8  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   2.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   8.4  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 0.39
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 97  FTVVNKVKHKSSSPPKDAPP 156
           + +VN V   S +PPK APP
Sbjct: 325 YCLVNIVLGDSDTPPKPAPP 344


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = -1

Query: 322 VVCTGSLTFSVXTTGLSGXLLISHCEILPHLGHHFWVLL 206
           ++  GS+ F +   G  G +  SHC  +       ++LL
Sbjct: 55  LIVLGSIIFVISFFGCCGAIRESHCMTITFASFLLFILL 93


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 21.4 bits (43), Expect = 2.8
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = +1

Query: 94  NFTVVNKVKHKSSSPPKDAPPEKKI 168
           NF   N + H+ S  PK    E  +
Sbjct: 45  NFETSNGISHQESGQPKQVDNETPV 69


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 2.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 130 SSPPKDAPPEKKIKG 174
           S PP+  PP +K  G
Sbjct: 393 SPPPRQTPPSRKESG 407


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +2

Query: 20  GKYISIVNN 46
           GKY+ IVNN
Sbjct: 283 GKYLCIVNN 291


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.310    0.128    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,970
Number of Sequences: 438
Number of extensions: 1478
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6968808
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.4 bits)