Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30799
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    56   4e-09
SPBC725.17c |rrn11||RNA polymerase I transcription factor subuni...    31   0.18 
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster...    29   0.96 
SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces pombe...    28   1.3  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   3.9  
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    26   6.8  

>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 56.4 bits (130), Expect = 4e-09
 Identities = 28/54 (51%), Positives = 37/54 (68%)
 Frame = +3

Query: 345 RIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQR 506
           ++R +L  GTVCILLAGR  GKRVV++  L    L+VTGP+  N  P+RR+  R
Sbjct: 47  KLRASLAPGTVCILLAGRFRGKRVVVLSQL-EDTLVVTGPYKVNGVPIRRVNHR 99


>SPBC725.17c |rrn11||RNA polymerase I transcription factor subunit
           Rrn11 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -1

Query: 427 PTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNGRPPDEARIFS 293
           P S+ + P  LP+RR +T  I  L  ++  CLL    P  +R FS
Sbjct: 21  PESSVIPPIPLPSRRYKTRHIDALCSLMHLCLLRKDYPRASRAFS 65


>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = -3

Query: 758 PRSTFLSGRAPNGFESQPRRLSSDRFCAAQMERISLFLWQRCHHP 624
           P S+ LS  AP+G   QP   +   +   Q    SL LW  CH P
Sbjct: 93  PVSSLLSEPAPHGLAGQPTHPTFLYYI--QSVAPSLCLWDACHFP 135


>SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 264

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 18/46 (39%), Positives = 29/46 (63%)
 Frame = +3

Query: 555 QNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIR 692
           +NTS  +T   IRS SN   + K + T LP+ K+N F  S+++P++
Sbjct: 180 ENTSGDLT---IRSDSNY--SIKSLTTWLPKWKKNDFKTSNSQPVK 220


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +1

Query: 205 TVVVKQIGGEKNGGTRTYPSNVGSPSTPLRRKSVPHLVAVHSASMYAGS 351
           T  V + G      T TYPS+  S +T     S  H  + HS+S  + S
Sbjct: 593 TSTVSESGSSSASITSTYPSSTLSMTTSHLSSSSVHSSSAHSSSSRSSS 641


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
 Frame = +1

Query: 256 YPSNVGSPST-----PLRRKSVPHLVAVHSASMY 342
           Y SNV SPS      P R  ++  L+ VHS  MY
Sbjct: 96  YVSNVPSPSDVFLRIPAREATLEELLQVHSQEMY 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,069,280
Number of Sequences: 5004
Number of extensions: 61801
Number of successful extensions: 236
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)