Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30799
         (766 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal prote...    62   3e-10
Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical pr...    31   0.90 
AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...    29   4.8  
AF039053-5|AAC25875.2|  293|Caenorhabditis elegans Serpentine re...    28   8.4  

>U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 6 protein.
          Length = 217

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 34/53 (64%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
 Frame = +3

Query: 348 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQ 503
           +R  L  GTV I+LAGRH GKRVV +  LP SGLLLVTGP   N  PLRRI Q
Sbjct: 67  LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQ 119



 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 32/79 (40%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
 Frame = +2

Query: 503 ALVICTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEKYVPSEQRK 682
           A VI TS ++++   K+P+H ND+YF               G +IFA+ K +Y  SEQRK
Sbjct: 120 AFVIATSLKVNVSGVKIPEHINDEYFKRKSTAQKT------GKNIFASGKTEYTVSEQRK 173

Query: 683 TDQKTVDE---AVIQSHSE 730
            D KTVD    A I+ H E
Sbjct: 174 KDIKTVDAPILAAIKKHPE 192



 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +1

Query: 85  RNYDLGNGVMRFSKSKMFHKKAKYK 159
           RN+DL  GV+RFS S++  KK + K
Sbjct: 12  RNFDLSPGVLRFSASRLRLKKGEKK 36


>Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical
           protein C54C8.12 protein.
          Length = 82

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +3

Query: 279 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKR 413
           FYPT+   +A S G P +       PN ++  V    A RHAG R
Sbjct: 26  FYPTEISTKARSHGHPVNTLGESEDPNFQVDNVPGERARRHAGPR 70


>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
           protein E01A2.4 protein.
          Length = 504

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +3

Query: 594 SASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*FKAIRSPTRQ 743
           S S  +S++  V  S P++KR      SA P RR+      K  RSP R+
Sbjct: 61  SDSRSRSSSPVVKNSPPKRKREPIRAPSASPPRRRRDDSPRKRSRSPPRR 110


>AF039053-5|AAC25875.2|  293|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 23 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = -1

Query: 727 RMALNHSLVDCLLIGFALLRWNVFLFFC 644
           R  + +S++ CL+ G+A+ +++   +FC
Sbjct: 122 RSLVTNSVILCLIFGYAIFQYSFIYYFC 149


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,462,924
Number of Sequences: 27780
Number of extensions: 367316
Number of successful extensions: 1002
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)