Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30798
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.9  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    26   5.1  
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp...    26   6.8  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    26   6.8  
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar...    26   6.8  
SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.0  
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy...    25   9.0  
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac...    25   9.0  
SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces po...    25   9.0  

>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 215 WRQREKDQKTWSSVVSVPEVITVILENS 298
           W+  + +  TWSSV + PE + ++L N+
Sbjct: 32  WQSGQVNTVTWSSVSTDPEEMVIMLVNN 59


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -1

Query: 427  IWCCF--FTGDVGIRSVLTIFSSILSRIQWLFSSFSSFKAYLL 305
            I CC   F   V   +   IF+ I   ++ + SS +SFK YLL
Sbjct: 1185 ILCCMSDFVSRVEGENTSKIFTEISKFVREIISSSNSFKNYLL 1227


>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
           Alp13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 469 SPMKNDSSNSTVSLKNNSSNSTVSYEKTTHQIP 567
           S  K+DS+    S K +  +STV+ +  +H++P
Sbjct: 89  STSKHDSTGVKTSGKRSRESSTVTVDGDSHELP 121


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
 Frame = +1

Query: 445 KTTYQIPLSP---MKNDSSNSTV--SLKN--NSSNSTVSYEKTTHQIPLFPVRKLHIKFR 603
           K+  ++PL P   +     N T+  SL +  NSSNSTVS+     ++    + +L+  F 
Sbjct: 511 KSHIELPLLPTDILSKSIDNQTIYSSLYSSLNSSNSTVSFSGIFDRVEKSVISELNFSFL 570

Query: 604 CFL 612
            FL
Sbjct: 571 FFL 573


>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
           Gda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 556

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 273 SSP*FWKTAIPRR*ALKEEKEENNHCI 353
           S P +W+ A     ALKE KEE   C+
Sbjct: 472 SGPTYWQDAFSLTDALKELKEEPEWCL 498


>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 466 LSPMKNDSSNSTVSLKNNSSNSTVS 540
           L P+ NDS+ ++ +LKN+S   T S
Sbjct: 101 LHPLDNDSTRTSKTLKNSSEVLTAS 125


>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 385

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +1

Query: 460 IPLSPMKNDSSNSTVSLKNNSSNSTVSYEKTTHQIPLFPV 579
           +P+S   + ++N+T    + SS+S+ S E ++  IP+  V
Sbjct: 61  VPISTHTSSATNTTSGQLSISSSSSTSSEYSSSSIPITTV 100


>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
           Vps23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 487

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 384 TLRIPTSPVKKQHQIPPSPVKNNL 455
           +LR P+S +  Q  IPP P +N +
Sbjct: 241 SLRRPSSNIPAQKPIPPKPEQNEI 264


>SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 508

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 14/64 (21%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
 Frame = +3

Query: 351 ILERIEEKIVKTLR---IPTSPVKKQHQIPPSPVKNNLSNSTVSYEKRLFKFHRLLEKQL 521
           +++++ +K ++ +R   + T  + +Q  +   P++ +   +  +Y   LFKF+R L  +L
Sbjct: 135 LVDKLRDKAIERIRNYIVVTIKMFRQAFVDVFPIRKHRLIANKNYYLFLFKFNRKLALEL 194

Query: 522 FKFY 533
            + Y
Sbjct: 195 QRAY 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,086,734
Number of Sequences: 5004
Number of extensions: 64726
Number of successful extensions: 223
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)