Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30798
         (766 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr...    30   2.1  
U97010-1|AAB52322.1|  334|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U00054-1|AAA50716.1|   91|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z32680-1|CAA83599.1| 1223|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AF040654-2|AAK21449.2| 1014|Caenorhabditis elegans Hypothetical ...    29   3.6  
AF043704-2|AAX88816.1|  407|Caenorhabditis elegans Prion-like-(q...    29   4.8  
Z77667-7|CAB01238.2|  534|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z81464-1|CAE17676.1|  131|Caenorhabditis elegans Hypothetical pr...    28   8.4  
Z81460-5|CAB03832.1|  952|Caenorhabditis elegans Hypothetical pr...    28   8.4  
Z70209-3|CAA94147.1|  952|Caenorhabditis elegans Hypothetical pr...    28   8.4  
U97593-7|AAB52878.1|  591|Caenorhabditis elegans Prion-like-(q/n...    28   8.4  
U97593-6|AAB52879.2|  925|Caenorhabditis elegans Prion-like-(q/n...    28   8.4  
U97593-5|AAB52880.1| 1175|Caenorhabditis elegans Prion-like-(q/n...    28   8.4  
AF067949-4|AAC19237.1|  415|Caenorhabditis elegans Hypothetical ...    28   8.4  

>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical
           protein F35A5.1 protein.
          Length = 1274

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
 Frame = +3

Query: 234 IKKPGPRSSPYLKSSP*FWKTAIPRR*ALKEEKEENNHCILERIEEKI-VKTLRIPTS-- 404
           I  P P  +P  K  P +    +P     + E        L++ E    VK +  P+   
Sbjct: 199 IVPPTPIKNPAKKWKPPWEDDEVPTEEIKEPEPATRKVPALKKKEPSTSVKPVSDPSPTK 258

Query: 405 --PVKKQHQIPPSPVKN 449
             PVKK+ ++PP+P+KN
Sbjct: 259 KVPVKKEPEVPPTPIKN 275


>U97010-1|AAB52322.1|  334|Caenorhabditis elegans Hypothetical
           protein W08A12.4 protein.
          Length = 334

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 21/74 (28%), Positives = 34/74 (45%)
 Frame = +1

Query: 445 KTTYQIPLSPMKNDSSNSTVSLKNNSSNSTVSYEKTTHQIPLFPVRKLHIKFRCFL*EAN 624
           K   QI L  M+N+SSN +V   N + +  +  +K         V ++     C L E +
Sbjct: 241 KHVLQILLKNMENESSNMSVMYDNTNKSFLLDIQKA--------VDEISFSCACLLRELD 292

Query: 625 *GANFITYSNSSGE 666
            GAN    +N +G+
Sbjct: 293 HGANLTKLTNLTGK 306


>U00054-1|AAA50716.1|   91|Caenorhabditis elegans Hypothetical
           protein K07E12.2 protein.
          Length = 91

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +3

Query: 315 ALKEEKEENNHCILERIEEKIVKTLRIPTSPVKKQ 419
           ALK E+E    C LE ++EK+VK + +  + +KK+
Sbjct: 59  ALKMEQE----CCLENVKEKVVKMISVVKAEIKKE 89


>Z32680-1|CAA83599.1| 1223|Caenorhabditis elegans Hypothetical protein
            C28A5.1 protein.
          Length = 1223

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 318  LKEEKEENNHCILERIEEKIVKTLRIPTSPVKKQHQIPPSPV 443
            LK+ K +   CI  R+  +   T+ +P   +K +  +PP PV
Sbjct: 995  LKDLKYDEEFCIFWRLVVEFSDTVPLPRLIIKSKIYVPPPPV 1036


>AF040654-2|AAK21449.2| 1014|Caenorhabditis elegans Hypothetical
           protein R06B10.2 protein.
          Length = 1014

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 357 ERIEEKIVKTLRIPTSPVKKQHQIPPSPVKN 449
           + ++ KIVK L+       K+HQ+ PS VKN
Sbjct: 562 QTVDLKIVKELKAVIDEEMKKHQLNPSDVKN 592


>AF043704-2|AAX88816.1|  407|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 72
           protein.
          Length = 407

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 333 EENNHCILERIEEKIVKTLRIPTSPVKKQHQIPPSPV 443
           E  NH  L +IEE ++  L  PTS +      PPSP+
Sbjct: 313 ETENHQ-LHQIEENVISALSTPTSTISASPS-PPSPL 347


>Z77667-7|CAB01238.2|  534|Caenorhabditis elegans Hypothetical
           protein M04B2.5 protein.
          Length = 534

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
 Frame = +3

Query: 549 NY-TSNS--TVSCEKTTYQIPLFPVRSKLRRKFY---HIFKLIG 662
           NY T+NS  T+S  ++T  +P+ PV ++  + FY   H  K IG
Sbjct: 94  NYNTTNSKKTMSMAQSTRSVPIVPVNNRFHKSFYWFAHNHKKIG 137


>Z81464-1|CAE17676.1|  131|Caenorhabditis elegans Hypothetical
           protein B0462.4 protein.
          Length = 131

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 354 LERIEEKIVKTLRIPTSPVKKQHQIPPSPVKNNLS 458
           L R++EK+ + L+  +S    +H IP +  KN+LS
Sbjct: 92  LSRVQEKLQRKLKKASSLEDLEHLIPQNTRKNSLS 126


>Z81460-5|CAB03832.1|  952|Caenorhabditis elegans Hypothetical
           protein C04A11.4 protein.
          Length = 952

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 460 IPLSPMKNDSSNSTVSLKNNSSNSTVSYEKTTHQ-IPLFPV 579
           IP+  +KN +  S   L N +     + E+ THQ + L+PV
Sbjct: 778 IPMVTLKNPNLASPTPLLNPAEKEEQNQERATHQHVELYPV 818


>Z70209-3|CAA94147.1|  952|Caenorhabditis elegans Hypothetical
           protein C04A11.4 protein.
          Length = 952

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 460 IPLSPMKNDSSNSTVSLKNNSSNSTVSYEKTTHQ-IPLFPV 579
           IP+  +KN +  S   L N +     + E+ THQ + L+PV
Sbjct: 778 IPMVTLKNPNLASPTPLLNPAEKEEQNQERATHQHVELYPV 818


>U97593-7|AAB52878.1|  591|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform b protein.
          Length = 591

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 493 NSTVSLKNNSSNSTVSYEKTTHQIPL 570
           NS+ +  NNSS+ST  Y  ++  IPL
Sbjct: 95  NSSATAANNSSSSTHHYNSSSQAIPL 120


>U97593-6|AAB52879.2|  925|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform c protein.
          Length = 925

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 493 NSTVSLKNNSSNSTVSYEKTTHQIPL 570
           NS+ +  NNSS+ST  Y  ++  IPL
Sbjct: 514 NSSATAANNSSSSTHHYNSSSQAIPL 539


>U97593-5|AAB52880.1| 1175|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform a protein.
          Length = 1175

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 493 NSTVSLKNNSSNSTVSYEKTTHQIPL 570
           NS+ +  NNSS+ST  Y  ++  IPL
Sbjct: 679 NSSATAANNSSSSTHHYNSSSQAIPL 704


>AF067949-4|AAC19237.1|  415|Caenorhabditis elegans Hypothetical
           protein T10H9.3 protein.
          Length = 415

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +3

Query: 363 IEEKIVKTLRIPTSPVKKQHQIPPSPVKNNLSNSTVSYEKRLFKFHRLL 509
           IE+K ++    P    ++     PSP   N+SN  +S+   ++ F ++L
Sbjct: 22  IEQKHIRRHNKPPGDYRRDEN-RPSPAFTNISNVALSFGAEMYLFRKML 69


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,175,979
Number of Sequences: 27780
Number of extensions: 368290
Number of successful extensions: 1207
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1207
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)