Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30798
         (766 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    24   1.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.4  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           23   4.1  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           23   4.1  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   5.4  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 311 VSFERRKRRK*PLYPGKNRGENCQDTANSNVSCEK 415
           + FE +KRRK  L   K    +  D+  SN+ C+K
Sbjct: 118 LKFEEQKRRKKSLDDVKILRNDRIDSYKSNLKCDK 152


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 502  RWNLKSRFS*ETVEFDKLFFTGDGGIW 422
            +W  KS+ + E  ++   +  GD GIW
Sbjct: 927  KWQHKSQDTTEVTKYILQYKEGDAGIW 953


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 502  RWNLKSRFS*ETVEFDKLFFTGDGGIW 422
            +W  KS+ + E  ++   +  GD GIW
Sbjct: 923  KWQHKSQDTTEVTKYILQYKEGDAGIW 949


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 237 KKPGPRSSPYLKSSP*F 287
           K PGP+   YL+ SP F
Sbjct: 70  KPPGPKDLVYLEPSPPF 86


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 237 KKPGPRSSPYLKSSP*F 287
           K PGP+   YL+ SP F
Sbjct: 71  KPPGPKDLVYLEPSPPF 87


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = +1

Query: 481 NDSSNSTVSLKNNSSNSTVSYEK---TTHQIPL 570
           NDSS    S ++++SNS   YE+   +TH + L
Sbjct: 26  NDSSGIPHSAESSASNSPDHYERFSPSTHLMDL 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,279
Number of Sequences: 438
Number of extensions: 4817
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)