Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30797
         (794 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.07 |ilv1||acetolactate synthase catalytic subunit|Schiz...    29   0.58 
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    28   1.3  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   3.1  
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ...    27   4.1  
SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...    26   5.4  
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac...    26   5.4  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    26   7.1  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    25   9.4  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    25   9.4  

>SPBP35G2.07 |ilv1||acetolactate synthase catalytic
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 669

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 419 WPGTFYKSRYGHTFRRNP 472
           W   FY+ RY HT ++NP
Sbjct: 584 WQNLFYEKRYSHTHQKNP 601


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -1

Query: 380 VLQCGSTRQLVP-YLRHDCVCELFHAF 303
           V QC ST  + P YLR D + E FH F
Sbjct: 676 VSQCASTDGVTPEYLRTDVLPEFFHCF 702


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -2

Query: 385 LMSCSVVPQGNLCPISAMIVYANCSMRFGVPPMHTNLTSPNISTDHGS 242
           L S SV+P   +   S  +  ++ S+    P   TNLT+   +T  GS
Sbjct: 239 LSSSSVLPTSIITSTSTPVTVSSSSLSSFTPSYSTNLTTTGSTTTTGS 286


>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +1

Query: 76  HRRTFDNDDEFQEADGTPVGADDNSVRYPDGTVRLRNPNIELMDQDILY 222
           H  T D      ++ GT +   DN   Y D   R+ +P     DQDIL+
Sbjct: 168 HALTLDTKLRTVQSCGTNLSLLDNFYYYQDHIDRIFDPQYIPSDQDILH 216


>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = -3

Query: 237 PKGQMVENILVHEFNVRVTQSDSAIWVSNGIVVG 136
           PK  +++ +++    ++ TQS+S  +  NG+VVG
Sbjct: 403 PKSALID-LVIATTALKYTQSNSVCYAKNGMVVG 435


>SPCC4G3.08 |psk1||serine/threonine protein kinase
           Psk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 436

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -1

Query: 374 QCGSTRQLVPYLRHDCVCELFHAFR 300
           Q  + RQ++  +RH  +C L++AF+
Sbjct: 136 QTKNERQILEEVRHPFICRLYYAFQ 160


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 375 QDISHFSYRYSMYKVGPVLSISHGMGIPSVGILLHEVIKLMYHAKSVI 518
           +DIS FSY  S  +  P+  +++ +   S+  L  EVIK     + +I
Sbjct: 186 EDISSFSYHMSFLQNYPIEKLNYLLQ-SSIEYLASEVIKFSAELRQII 232


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +3

Query: 462 VGILLHEVIKLMYHAKSVILCSSESEHVVV*ATKAARLLFP 584
           +GI  HEVIKL+  A+   L SS + ++++      R+L P
Sbjct: 312 IGIQTHEVIKLL--ARLFFLPSSANFYLLLIQFNTERILLP 350


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 20/64 (31%), Positives = 30/64 (46%)
 Frame = +1

Query: 28  NGINAVQSQATCSRNPHRRTFDNDDEFQEADGTPVGADDNSVRYPDGTVRLRNPNIELMD 207
           NG+N   S+      P+ +T +ND   Q      V ADD  V   D T+ +   N+  +D
Sbjct: 737 NGMNDSASETDLDIQPNHKTSNND---QMGYDQSVSADD--VPEVDNTI-VTEKNVSNLD 790

Query: 208 QDIL 219
           Q+ L
Sbjct: 791 QESL 794


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,368,649
Number of Sequences: 5004
Number of extensions: 72325
Number of successful extensions: 191
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)