Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30797
(794 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0212 + 19347142-19347444,19348853-19348907,19349117-193492... 33 0.35
09_04_0192 + 15478270-15480257,15480358-15480640,15480727-15481116 31 1.1
06_03_0830 + 25159758-25162460 31 1.4
01_05_0215 + 19374279-19374327,19374629-19374633,19376902-193769... 30 1.8
01_06_1610 - 38625427-38625726,38625814-38625885,38626001-386261... 29 4.3
07_03_0305 - 16475127-16476017,16476058-16478067 29 5.6
01_06_1037 + 33990358-33991263 29 5.6
08_01_0511 + 4459685-4459755,4461553-4463653,4463741-4463808,446... 28 7.4
04_04_0941 - 29544252-29544355,29545155-29545299,29545637-295457... 28 7.4
03_06_0497 - 34332310-34334415 28 7.4
01_06_1348 - 36490416-36490491,36490671-36490789,36490882-364909... 28 9.8
>01_05_0212 +
19347142-19347444,19348853-19348907,19349117-19349292,
19350033-19350254,19350359-19350597,19351100-19351625,
19351707-19351980,19352166-19352225,19352362-19353025,
19353747-19353975,19354071-19354337,19354414-19354602,
19354771-19355415
Length = 1282
Score = 32.7 bits (71), Expect = 0.35
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Frame = +3
Query: 333 MAEIGHKLPCGTTLQDISHFSYRYS----MYKVGPVLSISHGMGIPSVGILLHEVIKLMY 500
M E K+P G IS Y + +G V + HG+ P GIL+ IK+ Y
Sbjct: 712 MEETTDKVPRGQKKASISRLFYLNKPEAFVLVLGSVTAAMHGLMFPIFGILISSAIKMFY 771
Query: 501 HAKSVILCSS 530
S +L S
Sbjct: 772 EPPSELLKDS 781
>09_04_0192 + 15478270-15480257,15480358-15480640,15480727-15481116
Length = 886
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 342 IGHKLPCGTTLQDISHFSYRYSMYKVGPVLSISHGMGIPSV 464
+ H+LP T S F + +S+ L +SHG+G+ V
Sbjct: 52 VAHRLPLNATPDPGSPFGFAFSLSADAHALQLSHGLGLAHV 92
>06_03_0830 + 25159758-25162460
Length = 900
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +1
Query: 28 NGINAVQSQATCSRNPHRRTFDNDDEFQEADGTPVGADDNSVR 156
NG + S ++ SR P R FD +D DG GAD++SV+
Sbjct: 661 NGDWSHPSSSSSSRQPAVRNFDLNDNTPIVDGFLRGADESSVK 703
>01_05_0215 +
19374279-19374327,19374629-19374633,19376902-19376956,
19377159-19377334,19378020-19378241,19378334-19378572,
19379201-19379726,19379801-19380074,19380524-19381187,
19381604-19381832,19381924-19382190,19382308-19382496,
19382664-19383308
Length = 1179
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 417 VGPVLSISHGMGIPSVGILLHEVIKLMYHAKSVILCSS 530
+G + + HG+ P GIL+ IK+ Y +S +L +S
Sbjct: 641 LGSITAAMHGVIFPVFGILVSSAIKMFYEPRSELLKNS 678
>01_06_1610 -
38625427-38625726,38625814-38625885,38626001-38626117,
38626509-38626674,38626768-38626815,38626889-38626962,
38627126-38627243,38627332-38627420,38627512-38627687,
38627785-38627898,38627981-38628051,38628431-38628477,
38628581-38628721,38629095-38629136
Length = 524
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 7 TKMNGHTNGINAVQSQATCSRNPHRRTFDNDDEFQEADGTPVGADDNSV 153
T +G N IN S ++ P + DNDD ++ P G DD+++
Sbjct: 430 TSCSGENNSINPSPSSNGDAKEP-TESQDNDDSDDDSSDDPDGEDDDAL 477
>07_03_0305 - 16475127-16476017,16476058-16478067
Length = 966
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -2
Query: 355 NLCPISAMIVYANCSMRFGVPP-MHTNLTSPNISTDHGSRSQGPNGREYL 209
N+ P + NC +R +PP +H NLTS + G+ P E L
Sbjct: 210 NMLPSLQHLSLRNCGLRNAIPPPLHMNLTSLEVIDLSGNPFHSPVAVEKL 259
>01_06_1037 + 33990358-33991263
Length = 301
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 224 IWPLGAAPMIC*DVWRRQVCVHGRNTETHGTIRIHNHG 337
+W + AA M+ WRR C+ GR E + + H HG
Sbjct: 226 VWSMVAAGMVPRTAWRRLGCLEGR-LEYYVCVSGHLHG 262
>08_01_0511 +
4459685-4459755,4461553-4463653,4463741-4463808,
4465156-4465282,4465379-4465429
Length = 805
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2
Query: 590 AVDGALRNVLELTVLGKIVQRPAKLDRRLVREL 688
A + +L+NV LT+ G V+ P+ LD +++R L
Sbjct: 293 ATNLSLKNVRSLTIFGYFVKTPSLLDFKVLRVL 325
>04_04_0941 -
29544252-29544355,29545155-29545299,29545637-29545775,
29545836-29545893,29546012-29546123,29546311-29546484,
29547276-29547450,29547531-29547589,29548008-29548109,
29548178-29548212,29549017-29549111,29549638-29549686,
29549754-29549812,29549978-29550051,29550204-29550296,
29550389-29550769
Length = 617
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -1
Query: 491 LYDFVKQDSDGRYAHTVTYRKYRANFIHGV-SVRKMTDVL 375
L DFVK DGR+ + Y K+ N IH S+ + ++L
Sbjct: 134 LMDFVKLGKDGRFQSAI-YHKFIHNLIHATDSIDPLLELL 172
>03_06_0497 - 34332310-34334415
Length = 701
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 97 DDEFQEADGTPVGADDNSVR 156
DDEF + D VG DDNS++
Sbjct: 161 DDEFADIDDNHVGIDDNSLK 180
>01_06_1348 -
36490416-36490491,36490671-36490789,36490882-36490991,
36491121-36491304
Length = 162
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 293 RNTETHGTIRIHNHGGDRAQVALWNHT 373
R +T + I +HG D A+ LW+HT
Sbjct: 33 RKGDTLVLLHIRHHGRDEAKNVLWSHT 59
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,667,529
Number of Sequences: 37544
Number of extensions: 501455
Number of successful extensions: 1319
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1316
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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