Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30797
         (794 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13646-2|AAP68930.1|  295|Caenorhabditis elegans Hypothetical pr...    73   3e-13
AC024880-3|AAF60915.3|  675|Caenorhabditis elegans Hypothetical ...    29   3.8  
Z81592-1|CAB04725.1|  695|Caenorhabditis elegans Hypothetical pr...    28   8.9  
AF068713-1|AAC17794.1|  206|Caenorhabditis elegans Hypothetical ...    28   8.9  

>U13646-2|AAP68930.1|  295|Caenorhabditis elegans Hypothetical
           protein ZK783.2 protein.
          Length = 295

 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 38/82 (46%), Positives = 49/82 (59%)
 Frame = +3

Query: 261 MFGDVKFVCMGGTPKRMEQFAYTIMAEIGHKLPCGTTLQDISHFSYRYSMYKVGPVLSIS 440
           +FGD KFVC GG+P R + +A     E    +PC   L      S R+ +YK GPV  I+
Sbjct: 41  VFGDTKFVCTGGSPGRFKLYAEWFAKEAN--IPCSENLSR----SDRFVIYKTGPVCWIN 94

Query: 441 HGMGIPSVGILLHEVIKLMYHA 506
           HGMG PS+ I+L E  KLM+HA
Sbjct: 95  HGMGTPSLSIMLVESFKLMHHA 116



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 28/88 (31%), Positives = 39/88 (44%)
 Frame = +2

Query: 509 VRDPVFFRXXXXXXXXXXXXXXXXSDEAVDGALRNVLELTVLGKIVQRPAKLDRRLVREL 688
           V++P F R                S EA++  L +     + GK ++RP +LD  L RE 
Sbjct: 118 VKNPTFIRLGTSGGVGVPPGTVVVSTEAMNAELGDTYVQIIAGKRIERPTQLDAAL-REA 176

Query: 689 KALADPEDPYDTVTGKTMCTYDFYEDKV 772
                 E      TGKTMC  DFYE ++
Sbjct: 177 LCEVGKEKSIPVETGKTMCADDFYEGQM 204


>AC024880-3|AAF60915.3|  675|Caenorhabditis elegans Hypothetical
           protein Y97E10AR.1 protein.
          Length = 675

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/27 (48%), Positives = 21/27 (77%)
 Frame = +2

Query: 611 NVLELTVLGKIVQRPAKLDRRLVRELK 691
           N+L+L  L +I++ PAKL RRL++ L+
Sbjct: 632 NILDLDELFQIMKHPAKLSRRLLQILQ 658


>Z81592-1|CAB04725.1|  695|Caenorhabditis elegans Hypothetical
           protein T16G1.1 protein.
          Length = 695

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 55  ATCSRNPHRRT-FDNDDEFQEADGTPVGADDNSVRY 159
           +T   NP+R++ +D DD++++ DG   G + N   Y
Sbjct: 330 STSMPNPNRKSKYDEDDDYEDGDGN--GCNGNGCSY 363


>AF068713-1|AAC17794.1|  206|Caenorhabditis elegans Hypothetical
           protein T24A6.7 protein.
          Length = 206

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 362 TRQLVPYLRHDCVCELFHAFRCSAHAHKLDVSKHLN 255
           T+Q V + + DCV   F+    SA   + DV K++N
Sbjct: 12  TKQFVFFYKFDCVFSNFYPCEFSAQEFENDVEKNVN 47


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,038,836
Number of Sequences: 27780
Number of extensions: 422884
Number of successful extensions: 1205
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1204
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)