Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30797
         (794 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    27   0.20 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.7  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    21   10.0 
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    21   10.0 
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    21   10.0 
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    21   10.0 
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    21   10.0 
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    21   10.0 
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    21   10.0 

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 215 ISWSMSSMLGLRSRTVPSGYLTELS 141
           I W++  ++G+  R VP G+LT  S
Sbjct: 174 IPWALMPVMGVWGRFVPEGFLTSCS 198


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -1

Query: 653  DAELFFLKLSV-LEH-SSGLHRRLHRK*QPCRLRS 555
            D +     L+V LEH ++GL   LH +  PC LR+
Sbjct: 1076 DEDFVLHSLAVELEHGAAGLRLCLHHRDLPCVLRA 1110


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
          determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 6  YKNERPHQRY 35
          YKNER +Q+Y
Sbjct: 50 YKNEREYQKY 59


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
          determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 6  YKNERPHQRY 35
          YKNER +Q+Y
Sbjct: 50 YKNEREYQKY 59


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
          determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 6  YKNERPHQRY 35
          YKNER +Q+Y
Sbjct: 50 YKNEREYQKY 59


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
          determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 6  YKNERPHQRY 35
          YKNER +Q+Y
Sbjct: 50 YKNEREYQKY 59


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
          determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 6  YKNERPHQRY 35
          YKNER +Q+Y
Sbjct: 50 YKNEREYQKY 59


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
          determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 6  YKNERPHQRY 35
          YKNER +Q+Y
Sbjct: 50 YKNEREYQKY 59


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
          determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 6  YKNERPHQRY 35
          YKNER +Q+Y
Sbjct: 50 YKNEREYQKY 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,361
Number of Sequences: 438
Number of extensions: 5107
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)