Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30795
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    31   0.11 
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    28   1.4  

>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +1

Query: 34  ASPATVSPALFTGGSNPGLLARRRAD--AAFVPASAHVSGVRRATMRTEAARGTPALQTP 207
           +SPA+ S A F  GS+P  ++  + D  +      A  SGV R   RT A   +    + 
Sbjct: 409 SSPASNSNANFFFGSSPQSMSSEQTDMMSPITSPLAPFSGVTRRAARTRANSASSVFNSQ 468

Query: 208 ALPLSIESRSAVP 246
             PL  +  S +P
Sbjct: 469 LQPLQTDLLSPLP 481


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -3

Query: 133 RTPGQTPRPHD-AEQGVQGCSLQ*TGQGIRLQG 38
           RTP  +P PHD AE G +  S Q  G  +   G
Sbjct: 123 RTPSSSPYPHDRAEVGTKSLSAQFGGMSLGADG 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,450,095
Number of Sequences: 5004
Number of extensions: 45382
Number of successful extensions: 112
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)