Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30795
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0535 + 4006284-4006418,4006483-4006599,4007363-4007587,400... 30 1.4
07_01_0646 + 4853546-4853623,4853732-4855357,4855467-4855751,485... 30 1.9
09_04_0654 - 19247051-19247305,19247466-19247534,19247618-192477... 29 3.2
05_03_0209 + 10139857-10140041,10140223-10140294,10140374-101404... 29 3.2
10_08_0856 + 21099162-21099698,21100134-21101020,21101149-21101197 28 7.5
04_03_0703 - 18870287-18871351,18871542-18871733 28 7.5
03_02_0761 - 10963045-10963482,10963713-10963889,10964151-109642... 28 7.5
08_02_0613 - 19330124-19331587 27 9.9
03_06_0090 + 31570588-31570710,31570962-31571080,31572215-315722... 27 9.9
01_06_0468 - 29582506-29583147,29583313-29583600 27 9.9
>03_01_0535 +
4006284-4006418,4006483-4006599,4007363-4007587,
4008112-4008205,4008587-4008661,4009045-4009123,
4009385-4009400,4009441-4009584,4009822-4009904,
4010012-4010093
Length = 349
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +1
Query: 157 ATMRTEAARGTPALQTPALPLS 222
A+ R EAAR PA+Q PA PLS
Sbjct: 5 ASFRPEAARSPPAVQPPAPPLS 26
>07_01_0646 +
4853546-4853623,4853732-4855357,4855467-4855751,
4856131-4856277
Length = 711
Score = 29.9 bits (64), Expect = 1.9
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Frame = +1
Query: 31 IASPATVSPALFTG-GSNPGLLARRRADAAFVPASAHVSGVRRATMRTEAARGTPAL--- 198
+A A+ SP++F +N RR+ A+ A+A+ G + MR EAA G +
Sbjct: 1 MALQASSSPSMFRAIPTNTNASCRRKVRASAAAAAANGGGDGKVMMRKEAASGAWKIDYS 60
Query: 199 -QTPALPL 219
+ PA PL
Sbjct: 61 GEKPATPL 68
>09_04_0654 -
19247051-19247305,19247466-19247534,19247618-19247705,
19248010-19248105,19248650-19248763,19248852-19248985,
19249880-19250326
Length = 400
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/45 (42%), Positives = 25/45 (55%)
Frame = +1
Query: 61 LFTGGSNPGLLARRRADAAFVPASAHVSGVRRATMRTEAARGTPA 195
L GG+ G+L R+R++ A + VSGV EAA GTPA
Sbjct: 12 LGAGGAGAGVLLRQRSEVAVRCRAQQVSGV-------EAAAGTPA 49
>05_03_0209 +
10139857-10140041,10140223-10140294,10140374-10140445,
10141095-10141166,10141427-10141498,10141628-10141663,
10141958-10142029,10142107-10142181,10142449-10142514,
10142610-10142675,10142748-10142792,10142882-10142946,
10143066-10143445,10143530-10143728,10143801-10143959,
10144042-10144160,10144294-10144504,10145336-10145567,
10145650-10145800,10145899-10146162
Length = 870
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 639 NTMTSFLCTNKFCIMYSFRVMFVTIYSIMWTFKRD 535
NT S + NK C M +F + V Y + W F+ +
Sbjct: 33 NTHMSAILCNKICYMLAFADISVAGYLVTWNFRNN 67
>10_08_0856 + 21099162-21099698,21100134-21101020,21101149-21101197
Length = 490
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 187 TPALQTPALPLSIESRSAVPGTRHAHYCELFTLEQ 291
T AL++PA+ S R+A T + H+C T E+
Sbjct: 94 TAALRSPAVAGSAAGRAAARATAYQHFCAGETAEE 128
>04_03_0703 - 18870287-18871351,18871542-18871733
Length = 418
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +1
Query: 40 PATVSPALFTGGSNPGLLARRRADAAFVPASAHVS 144
PA PA +GG P AR RA AA V A H++
Sbjct: 67 PANAYPA--SGGGGPRARARARAVAAAVAAPPHIT 99
>03_02_0761 -
10963045-10963482,10963713-10963889,10964151-10964261,
10964982-10965227,10965571-10965630,10965729-10966034,
10966626-10966769,10966994-10967392
Length = 626
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 38 ALQPYPLPCLLEGATLDSLLGVVRTRRLSRRPL 136
AL P L +LEG+ ++ RT+RL R+PL
Sbjct: 588 ALDPAELDAVLEGSDPRGVVSRRRTQRLPRKPL 620
>08_02_0613 - 19330124-19331587
Length = 487
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -3
Query: 118 TPRPHDAEQGVQGCSLQ*TGQGIRLQGWR 32
+P PHD GV G + T G+ WR
Sbjct: 361 SPYPHDGGVGVHGVWVMTTDDGVAAPAWR 389
>03_06_0090 +
31570588-31570710,31570962-31571080,31572215-31572284,
31572544-31573492,31574789-31575699
Length = 723
Score = 27.5 bits (58), Expect = 9.9
Identities = 35/118 (29%), Positives = 44/118 (37%), Gaps = 10/118 (8%)
Frame = +1
Query: 55 PALFTGGSNPGLLARRRADAAFVPAS-AHVSGVRRATMRTEAARGTPALQT--PAL--PL 219
P L G N GLL RR AS H +R P L T AL P
Sbjct: 607 PRLSAGLENRGLLLRREVGQCASAASHEHFVEQVNGCLRVRLLAQPPELVTVEAALFTPR 666
Query: 220 SIESRS-AVPG----TRHAHYCELFTLEQLHRNCEVPPFRKYCCNACRDADRRQHRRY 378
S +R A PG + A + + + R+C C+ CR R +HRRY
Sbjct: 667 SYGARDGADPGRCGAAKQAAPSPVASTPR-RRSCREEAAAARACSGCRRGRRGEHRRY 723
>01_06_0468 - 29582506-29583147,29583313-29583600
Length = 309
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +2
Query: 281 HWNSCTGTARCRRSGNIAVTLAGTQTAVST 370
H N+ GTARC R G V+ G A T
Sbjct: 184 HVNNRRGTARCYRGGEAVVSYEGFTVASGT 213
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,058,701
Number of Sequences: 37544
Number of extensions: 340442
Number of successful extensions: 1157
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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